Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   D9C18_RS07710 Genome accession   NZ_CP032865
Coordinates   1428262..1428696 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain N3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1423262..1433696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C18_RS07695 (D9C18_07695) poxB 1423661..1425385 (-) 1725 WP_014478872.1 pyruvate oxidase -
  D9C18_RS07700 (D9C18_07700) mutT 1425452..1425901 (-) 450 WP_014478871.1 8-oxo-dGTP diphosphatase MutT -
  D9C18_RS07705 (D9C18_07705) topB 1426014..1428197 (-) 2184 WP_014478870.1 DNA topoisomerase III -
  D9C18_RS07710 (D9C18_07710) lrpC 1428262..1428696 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  D9C18_RS07715 (D9C18_07715) ydzA 1428881..1429171 (+) 291 WP_014478869.1 DUF3817 domain-containing protein -
  D9C18_RS07720 (D9C18_07720) amj 1429216..1430025 (-) 810 WP_014478868.1 lipid II flippase Amj -
  D9C18_RS07725 (D9C18_07725) ydaG 1430531..1430953 (-) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  D9C18_RS07730 (D9C18_07730) ydaF 1431031..1431582 (-) 552 WP_014478866.1 GNAT family protein -
  D9C18_RS07735 (D9C18_07735) lyxE 1431670..1432173 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  D9C18_RS07740 (D9C18_07740) ydaD 1432189..1433049 (-) 861 WP_014478865.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=279912 D9C18_RS07710 WP_003246585.1 1428262..1428696(-) (lrpC) [Bacillus subtilis subsp. subtilis strain N3-1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=279912 D9C18_RS07710 WP_003246585.1 1428262..1428696(-) (lrpC) [Bacillus subtilis subsp. subtilis strain N3-1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1