Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K20_RS27250 Genome accession   NZ_CP027743
Coordinates   6032255..6033622 (-) Length   455 a.a.
NCBI ID   WP_009050968.1    Uniprot ID   A0AB33WWE9
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain CW2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6027255..6038622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K20_RS27225 (C4K20_5531) - 6028093..6028290 (-) 198 WP_007930039.1 YbdD/YjiX family protein -
  C4K20_RS27230 (C4K20_5532) - 6028306..6030372 (-) 2067 WP_038575596.1 carbon starvation CstA family protein -
  C4K20_RS27235 (C4K20_5533) - 6030582..6031043 (+) 462 WP_124300563.1 isoprenylcysteine carboxylmethyltransferase family protein -
  C4K20_RS27240 (C4K20_5534) - 6031103..6031471 (+) 369 WP_023969440.1 PilZ domain-containing protein -
  C4K20_RS27245 (C4K20_5535) - 6031497..6032225 (-) 729 WP_124300564.1 hypothetical protein -
  C4K20_RS27250 (C4K20_5536) radA 6032255..6033622 (-) 1368 WP_009050968.1 DNA repair protein RadA Machinery gene
  C4K20_RS27255 (C4K20_5537) - 6033668..6034216 (-) 549 WP_038575592.1 ankyrin repeat domain-containing protein -
  C4K20_RS27260 (C4K20_5538) katB 6034289..6035830 (-) 1542 WP_009050970.1 catalase KatB -
  C4K20_RS27265 (C4K20_5539) mscL 6036117..6036530 (+) 414 WP_038575590.1 large-conductance mechanosensitive channel protein MscL -
  C4K20_RS27270 (C4K20_5540) - 6036584..6037360 (-) 777 WP_081359692.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48840.31 Da        Isoelectric Point: 7.1317

>NTDB_id=279899 C4K20_RS27250 WP_009050968.1 6032255..6033622(-) (radA) [Pseudomonas chlororaphis subsp. aurantiaca strain CW2]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPQGLRIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=279899 C4K20_RS27250 WP_009050968.1 6032255..6033622(-) (radA) [Pseudomonas chlororaphis subsp. aurantiaca strain CW2]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAATGGGCCGGCCAGTGCGGCGAATG
CGGAGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGCGGCGCCGCGGCCCCCAGCGGTCGCACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAGATTCCACGCTTTTCCACGGCTTCCGGCGAACTG
GACCGGGTGCTCGGTGGCGGTCTGGTCGACGGTTCGGTGGTGCTGATTGGCGGCGACCCGGGGATCGGCAAGTCGACCAT
TCTGCTGCAGACCTTGTGCAACATCGCCACCCGCATGCCGGCGCTCTACGTCACCGGCGAAGAATCGCAGCAACAGGTGG
CGATGCGTGCCCGGCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGTATCGAAACCATCATCGCC
ACGGCCCGGCAGGAGAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAACTGCAATCGGCCCC
CGGCGGGGTTTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGGGTCCTCGAGCATATGGTCGACACCGTGCTGTATTTCGAA
GGTGAGTCCGACGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGCGTGTTCGG
CATGACCGATCGCGGCCTGAAAGAGGTTTCCAACCCGTCGGCGATCTTTCTCACCCGTGCCCAGGAAGAAGTCCCGGGCA
GCGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AATCCGCGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCATCGCCACGGCGGCAT
TCCGACCCACGATCAGGATGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCTTGCCCCACGATCTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAAGTACGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAGGCGGCCAAGCACGGTTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCCCCGAAAGAGCCGCCACAGGGCTTGCGGATCATTGCGGTAACCCGTCTGGAACAGGCGCTGGATGCGCTGT
TCGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459
  radA Streptococcus pneumoniae Rx1

45.833

100

0.459
  radA Streptococcus pneumoniae D39

45.833

100

0.459
  radA Streptococcus pneumoniae R6

45.833

100

0.459
  radA Streptococcus pneumoniae TIGR4

45.833

100

0.459

Multiple sequence alignment