Detailed information NTG0279898

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K20_RS27005
• Genome accession: NZ_CP027743
• Coordinates: 5981519..5982847 (+)
• Length: 442 a.a.
• NCBI ID: WP_124300549.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain CW2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5976519..5987847

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K20_RS26985 (C4K20_5484)	pgeF	5978018..5978743 (-)	726	WP_038575648.1	peptidoglycan editing factor PgeF	-
C4K20_RS26990 (C4K20_5485)	rluD	5978740..5979702 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K20_RS26995 (C4K20_5486)	-	5979855..5980877 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
C4K20_RS27000 (C4K20_5487)	-	5981012..5981245 (+)	234	WP_124300548.1	PP0621 family protein	-
C4K20_RS27005 (C4K20_5488)	pilR	5981519..5982847 (+)	1329	WP_124300549.1	sigma-54 dependent transcriptional regulator	Regulator
C4K20_RS27010 (C4K20_5489)	thiO	5982844..5983944 (-)	1101	WP_124300550.1	glycine oxidase ThiO	-
C4K20_RS27015 (C4K20_5490)	-	5983999..5984400 (-)	402	WP_038575642.1	type IV pilin protein	-
C4K20_RS27020 (C4K20_5491)	-	5984414..5987482 (-)	3069	WP_124300551.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48650.02 Da
• Isoelectric Point: 7.9404

>NTDB_id=279898 C4K20_RS27005 WP_124300549.1 5981519..5982847(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain CW2]
MGPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCPHQETAVQALKAGAIDFLSKPVALARLRELLNGTLPGSTPANPATGPLLGDSTAMHKLRVQIDKLAQSQASIYIS
GESGSGKELVARAIHDQGPRAGRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVCAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENQQIEARDLCLTPNSAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279898 C4K20_RS27005 WP_124300549.1 5981519..5982847(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain CW2]
ATGGGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGCAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCCCCCACCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCCTGCGCGAGTTGCTGAACGGCACCCTGCCCGGATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TGGGCGATTCGACCGCCATGCATAAACTGCGCGTGCAGATCGACAAACTGGCCCAGAGTCAGGCCTCGATCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTGCGATCCACGACCAAGGACCACGGGCCGGCCGGGCCTTCGTGCC
AATCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCAGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCACTGCAGGCGGAAGTGTGTGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAGCTGGCGGTGCCACCGCTAAGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATACTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCAGCAGATCGAAGCACGCGATC
TATGCCTGACGCCCAATAGCGCCCACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCATTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.222	100	0.674
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457