Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECSMS35_RS24130 Genome accession   NC_010498
Coordinates   4892234..4892710 (+) Length   158 a.a.
NCBI ID   WP_001384029.1    Uniprot ID   -
Organism   Escherichia coli SMS-3-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4887234..4897710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECSMS35_RS24100 (EcSMS35_4797) - 4887903..4888787 (+) 885 WP_000010408.1 GTPase -
  ECSMS35_RS24110 (EcSMS35_4799) - 4888990..4889670 (+) 681 WP_001282919.1 WYL domain-containing protein -
  ECSMS35_RS24115 (EcSMS35_4800) - 4889818..4890495 (+) 678 WP_001097301.1 hypothetical protein -
  ECSMS35_RS27675 (EcSMS35_4801) - 4890525..4890734 (+) 210 WP_032150870.1 DUF905 family protein -
  ECSMS35_RS24120 (EcSMS35_4802) - 4890824..4891642 (+) 819 WP_001175175.1 DUF932 domain-containing protein -
  ECSMS35_RS24125 (EcSMS35_4803) - 4891734..4892219 (+) 486 WP_000213722.1 antirestriction protein -
  ECSMS35_RS24130 (EcSMS35_4804) radC 4892234..4892710 (+) 477 WP_001384029.1 RadC family protein Machinery gene
  ECSMS35_RS24135 (EcSMS35_4805) - 4892797..4893018 (+) 222 WP_000692350.1 DUF987 domain-containing protein -
  ECSMS35_RS24140 (EcSMS35_4806) - 4893098..4893466 (+) 369 WP_001285607.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECSMS35_RS24145 (EcSMS35_4807) - 4893556..4893933 (+) 378 WP_001094444.1 TA system toxin CbtA family protein -
  ECSMS35_RS24150 (EcSMS35_4808) - 4893930..4894418 (+) 489 WP_000761685.1 DUF5983 family protein -
  ECSMS35_RS24155 (EcSMS35_4809) - 4894438..4894635 (+) 198 WP_001327226.1 DUF957 domain-containing protein -
  ECSMS35_RS29555 (EcSMS35_4810) - 4894720..4894863 (+) 144 Protein_4602 hypothetical protein -
  ECSMS35_RS30185 - 4894833..4894967 (+) 135 Protein_4603 transcriptional regulator -
  ECSMS35_RS24160 (EcSMS35_4811) - 4895330..4896112 (+) 783 Protein_4604 integrase arm-type DNA-binding domain-containing protein -
  ECSMS35_RS25885 - 4896232..4896431 (+) 200 Protein_4605 transposase -
  ECSMS35_RS24170 (EcSMS35_4812) - 4896629..4897522 (-) 894 WP_000291809.1 WYL domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.25 Da        Isoelectric Point: 6.9859

>NTDB_id=27989 ECSMS35_RS24130 WP_001384029.1 4892234..4892710(+) (radC) [Escherichia coli SMS-3-5]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=27989 ECSMS35_RS24130 WP_001384029.1 4892234..4892710(+) (radC) [Escherichia coli SMS-3-5]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCGGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGGCTTATCACTGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392