Detailed information NTG0279887

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K20_RS08840
• Genome accession: NZ_CP027743
• Coordinates: 1946568..1948799 (+)
• Length: 743 a.a.
• NCBI ID: WP_124298825.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain CW2
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1941568..1953799

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K20_RS08815 (C4K20_1788)	-	1942689..1943348 (+)	660	WP_038580923.1	transglutaminase family protein	-
C4K20_RS08820 (C4K20_1789)	-	1943391..1944014 (+)	624	WP_096373425.1	glutathione S-transferase	-
C4K20_RS08825 (C4K20_1790)	-	1944147..1945079 (+)	933	WP_081362295.1	ABC transporter ATP-binding protein	-
C4K20_RS08830 (C4K20_1791)	-	1945076..1945855 (+)	780	WP_007931651.1	ABC transporter permease	-
C4K20_RS08835 (C4K20_1792)	-	1945904..1946419 (-)	516	WP_038580916.1	DUF2062 domain-containing protein	-
C4K20_RS08840 (C4K20_1793)	comA	1946568..1948799 (+)	2232	WP_124298825.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K20_RS08845 (C4K20_1794)	exbB	1948902..1949537 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K20_RS08850 (C4K20_1795)	-	1949534..1949962 (+)	429	WP_009047818.1	biopolymer transporter ExbD	-
C4K20_RS08855 (C4K20_1796)	lpxK	1949962..1950972 (+)	1011	WP_124298826.1	tetraacyldisaccharide 4'-kinase	-
C4K20_RS08860 (C4K20_1797)	-	1950996..1951181 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K20_RS08865 (C4K20_1798)	kdsB	1951178..1951942 (+)	765	WP_016702178.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K20_RS08870 (C4K20_1799)	-	1951942..1952406 (+)	465	WP_096373430.1	low molecular weight protein-tyrosine-phosphatase	-
C4K20_RS08875 (C4K20_1800)	murB	1952403..1953422 (+)	1020	WP_124298827.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81310.45 Da
• Isoelectric Point: 9.9468

>NTDB_id=279887 C4K20_RS08840 WP_124298825.1 1946568..1948799(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain CW2]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYALALFLLGLTWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPLHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLVAAEGGWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYVL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGVLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNTVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRLGDSDLGARVVLPSLRKLGVERLDLMLLSHADADHAGGA
DAVQRGLPVARLVSGDPEGLPAYLPAEPCVSGEQWQWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279887 C4K20_RS08840 WP_124298825.1 1946568..1948799(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain CW2]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTGTTGCCGGTAGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATGCATTGGCACTTTTTCTGTTGGGCCTGACGT
GGGCTTGCGTCAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGATGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGATTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGCTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGTCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGTTGCCGCGGAGGGTGGCTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAGGTCGA
TGCCCATGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTACGTCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCATTCGCTTC
GGCCCTGGGTTACGGGGTGCTGGCGGGCTTCGACGTGCCGGTGCGTCGCGCCTGTGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCATTTCTGCTGGCGTTGAATACGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGTTGGTGCTGCCGCCGGCGTTG
CTTGGCACCTTGTTCCTGGCGGTGCCCTACTTGGGCGAAGGCCTGCTCTGGCTGGCCGGCGGTTTGCTGGACTTGCTGTT
CCGCGGTCTGACGCTATTGGCTGCCCAATGGCCGGCATGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGAGCCTTTCTGCTGTTACTGCCCGCGGGTGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTCCCGCCGAAAAACACCCTGCCATACGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGGCTGGCGGTACTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGCCCGCGTTTGGGCGACTCCGACCTGGGCGCCCGGGTGGTGCTGC
CATCCTTGCGCAAGCTGGGCGTCGAGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCTGTCCAGCGCGGCTTACCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGTCAGCGGCGAGCAATGGCAATGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGTTGCTGACGGGGGATATCGATGCCCTGGCGGAA
CGCGCGTTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCACACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTGGCGCCTTCGGCAGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGCGCGGAGCAAGGAGCGCTGCGGTTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.117	96.77	0.62