Detailed information NTG0279709

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K33_RS26270
• Genome accession: NZ_CP027736
• Coordinates: 5901466..5902794 (+)
• Length: 442 a.a.
• NCBI ID: WP_063433072.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. piscium strain PCL1391
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5896466..5907794

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K33_RS26250 (C4K33_5332)	pgeF	5897964..5898689 (-)	726	WP_063433071.1	peptidoglycan editing factor PgeF	-
C4K33_RS26255 (C4K33_5333)	rluD	5898686..5899648 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K33_RS26260 (C4K33_5334)	-	5899801..5900823 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
C4K33_RS26265 (C4K33_5335)	-	5900958..5901191 (+)	234	WP_025807532.1	PP0621 family protein	-
C4K33_RS26270 (C4K33_5336)	pilR	5901466..5902794 (+)	1329	WP_063433072.1	sigma-54 dependent transcriptional regulator	Regulator
C4K33_RS26275 (C4K33_5337)	thiO	5902791..5903891 (-)	1101	WP_063433073.1	glycine oxidase ThiO	-
C4K33_RS26280 (C4K33_5338)	-	5903946..5904347 (-)	402	WP_009050937.1	type IV pilin protein	-
C4K33_RS26285 (C4K33_5339)	-	5904361..5907429 (-)	3069	WP_063433074.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48823.08 Da
• Isoelectric Point: 8.5088

>NTDB_id=279709 C4K33_RS26270 WP_063433072.1 5901466..5902794(+) (pilR) [Pseudomonas chlororaphis subsp. piscium strain PCL1391]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHRRLRMPLA
ILSTCARQETAVQALKAGAIDFLSKPVALSRLHELLNSTLPGSTPANPATGPLLGDSAAMHKLRGQIGKLAQSQASIYIS
GESGSGKELVARAIHDQGPRASHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDARILCATHKALQAEVRAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLATAILE
RLAQGDGQPLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTSHSAHPAIAPGAAQVIDLEDHLQ
EIERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279709 C4K33_RS26270 WP_063433072.1 5901466..5902794(+) (pilR) [Pseudomonas chlororaphis subsp. piscium strain PCL1391]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTTGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTGCCCGACGGCACTGGGCTGGAATTACTCGAGCATATCCAGCACCGTCGGCTGCGAATGCCGTTGGCG
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGTGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGTCTCGCTTGCACGAACTGCTAAACAGCACCCTACCCGGATCGACACCAGCGAACCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGGCAAACTGGCCCAGAGCCAGGCATCGATCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAATTGGTCGCCCGTGCCATCCACGACCAGGGACCACGAGCCAGCCACGCCTTCGTGCC
GGTCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGACATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAGCCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGACCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTCCAGGAGAAGGCCGTGCGCTGTGTCGGCGGGCAGCAGGAAGTCCAGGTCGATGC
GCGCATTCTCTGCGCCACCCACAAGGCATTGCAGGCGGAAGTGCGTGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCACCGCTACGGGCGCGCAAGGACGACATCGAACCCTTGGCCACAGCCATCCTCGAG
CGGCTGGCGCAGGGCGACGGCCAACCGCTGGCACGGCTTCAGCCAAGCGCACTGTTGGCGCTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCCCATACCCTGTGCGAGAACCGCCGGATCGAAGCGCGCGATC
TGCGCCTGACGTCACACAGCGCCCATCCGGCCATCGCGCCCGGAGCGGCCCAGGTGATCGACCTTGAAGACCATCTGCAA
GAAATCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGTTTGAGTCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.889	100	0.681
pilR	Acinetobacter baumannii strain A118	44.227	100	0.459