Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C4J87_RS24185 Genome accession   NZ_CP027734
Coordinates   5249825..5250232 (-) Length   135 a.a.
NCBI ID   WP_124364796.1    Uniprot ID   -
Organism   Pseudomonas sp. R1-43-08     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5244825..5255232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J87_RS24170 (C4J87_4800) - 5246840..5248879 (-) 2040 WP_124368682.1 methyl-accepting chemotaxis protein -
  C4J87_RS24175 (C4J87_4801) - 5248876..5249400 (-) 525 WP_124368683.1 chemotaxis protein CheW -
  C4J87_RS24180 (C4J87_4802) pilH 5249413..5249778 (-) 366 WP_034116227.1 twitching motility response regulator PilH -
  C4J87_RS24185 (C4J87_4803) pilG 5249825..5250232 (-) 408 WP_124364796.1 twitching motility response regulator PilG Regulator
  C4J87_RS24190 (C4J87_4804) gshB 5250472..5251425 (+) 954 WP_124368684.1 glutathione synthase -
  C4J87_RS24195 (C4J87_4805) - 5251503..5252408 (+) 906 WP_124368685.1 energy transducer TonB -
  C4J87_RS24205 (C4J87_4806) - 5252609..5253178 (+) 570 WP_124368687.1 YqgE/AlgH family protein -
  C4J87_RS24210 (C4J87_4807) ruvX 5253178..5253615 (+) 438 WP_003213744.1 Holliday junction resolvase RuvX -
  C4J87_RS24215 (C4J87_4808) pyrR 5253763..5254269 (+) 507 WP_124368688.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14966.52 Da        Isoelectric Point: 7.3843

>NTDB_id=279659 C4J87_RS24185 WP_124364796.1 5249825..5250232(-) (pilG) [Pseudomonas sp. R1-43-08]
MEQHSNALRVMVIDDSKTIRRTAETLLKNMGCEVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKAYVPAFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=279659 C4J87_RS24185 WP_124364796.1 5249825..5250232(-) (pilG) [Pseudomonas sp. R1-43-08]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGACGATTCGAAAACGATCCGCCGCACCGCCGAGACGCTGTT
GAAGAACATGGGGTGCGAGGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCCGAATCGTGGACCATCACCCGCACA
TTATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTACCAGACCTGCGCGCTGGTGAAGAATAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGTATCGTGGGTGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGGGTGCGATCAAGGCCTATGTGCCTGCCTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70.079

94.074

0.659

Multiple sequence alignment