Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   D9C16_RS13450 Genome accession   NZ_CP032861
Coordinates   2469461..2469691 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. subtilis strain N1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2464461..2474691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C16_RS13440 (D9C16_13440) spoVT 2465186..2465722 (-) 537 WP_003218365.1 stage V sporulation protein T -
  D9C16_RS13445 (D9C16_13445) mfd 2465858..2469391 (-) 3534 WP_121558225.1 transcription-repair coupling factor -
  D9C16_RS13450 (D9C16_13450) subA/fin 2469461..2469691 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  D9C16_RS13455 (D9C16_13455) pth 2469751..2470317 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  D9C16_RS13460 (D9C16_13460) rplYB 2470424..2471038 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  D9C16_RS13465 (D9C16_13465) prsS 2471123..2472076 (-) 954 WP_014478600.1 ribose-phosphate diphosphokinase -
  D9C16_RS13470 (D9C16_13470) glmU 2472099..2473469 (-) 1371 WP_014478599.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  D9C16_RS13475 (D9C16_13475) spoVG 2473662..2473955 (-) 294 WP_003218346.1 septation regulator SpoVG -
  D9C16_RS13480 (D9C16_13480) ridA 2474150..2474527 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=279655 D9C16_RS13450 WP_003243417.1 2469461..2469691(-) (subA/fin) [Bacillus subtilis subsp. subtilis strain N1-1]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=279655 D9C16_RS13450 WP_003243417.1 2469461..2469691(-) (subA/fin) [Bacillus subtilis subsp. subtilis strain N1-1]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1