Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | C4J87_RS05740 | Genome accession | NZ_CP027734 |
| Coordinates | 1294071..1295129 (+) | Length | 352 a.a. |
| NCBI ID | WP_005785454.1 | Uniprot ID | A0A0R3ALL9 |
| Organism | Pseudomonas sp. R1-43-08 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1278839..1335226 | 1294071..1295129 | within | 0 |
Gene organization within MGE regions
Location: 1278839..1335226
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4J87_RS05635 (C4J87_1109) | - | 1278839..1279327 (-) | 489 | WP_124366018.1 | Panacea domain-containing protein | - |
| C4J87_RS05640 (C4J87_1110) | - | 1279590..1280324 (+) | 735 | WP_124361528.1 | XRE family transcriptional regulator | - |
| C4J87_RS05645 (C4J87_1113) | - | 1280914..1281252 (+) | 339 | WP_124366019.1 | phage holin family protein | - |
| C4J87_RS05650 (C4J87_1114) | - | 1281272..1281787 (+) | 516 | WP_124366020.1 | hypothetical protein | - |
| C4J87_RS05655 (C4J87_1115) | - | 1281791..1282399 (+) | 609 | WP_124366021.1 | phage baseplate assembly protein V | - |
| C4J87_RS05660 (C4J87_1116) | - | 1282412..1282744 (+) | 333 | WP_124361531.1 | phage baseplate protein | - |
| C4J87_RS05665 (C4J87_1117) | - | 1282741..1283736 (+) | 996 | WP_124366022.1 | baseplate J/gp47 family protein | - |
| C4J87_RS05670 (C4J87_1118) | - | 1283733..1284371 (+) | 639 | WP_124366023.1 | phage tail protein I | - |
| C4J87_RS05675 (C4J87_1119) | - | 1284368..1284901 (+) | 534 | WP_124366024.1 | phage tail protein | - |
| C4J87_RS05680 (C4J87_1120) | - | 1284928..1285548 (+) | 621 | WP_124366025.1 | hypothetical protein | - |
| C4J87_RS05685 (C4J87_1121) | - | 1285561..1285818 (+) | 258 | WP_124366026.1 | tail fiber assembly protein | - |
| C4J87_RS26070 (C4J87_1122) | - | 1285905..1286078 (+) | 174 | WP_164484513.1 | hypothetical protein | - |
| C4J87_RS05690 (C4J87_1123) | - | 1286081..1287247 (+) | 1167 | WP_124366027.1 | phage tail protein | - |
| C4J87_RS05695 (C4J87_1124) | - | 1287247..1287753 (+) | 507 | WP_124366028.1 | phage major tail tube protein | - |
| C4J87_RS05700 (C4J87_1125) | - | 1287806..1288387 (+) | 582 | WP_124366029.1 | phage tail assembly protein | - |
| C4J87_RS05705 (C4J87_1127) | - | 1288516..1290738 (+) | 2223 | WP_124366030.1 | phage tail tape measure protein | - |
| C4J87_RS05710 (C4J87_1128) | - | 1290738..1291121 (+) | 384 | WP_124366031.1 | phage tail protein | - |
| C4J87_RS05715 (C4J87_1129) | - | 1291114..1291326 (+) | 213 | WP_124366032.1 | tail protein X | - |
| C4J87_RS05720 (C4J87_1130) | - | 1291336..1292337 (+) | 1002 | WP_124366033.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| C4J87_RS05725 (C4J87_1131) | - | 1292360..1292917 (+) | 558 | WP_124361544.1 | glycoside hydrolase family 19 protein | - |
| C4J87_RS05730 (C4J87_1132) | - | 1292905..1293405 (+) | 501 | WP_124366034.1 | lysis system i-spanin subunit Rz | - |
| C4J87_RS05735 (C4J87_1133) | - | 1293487..1293987 (+) | 501 | WP_124366035.1 | CinA family protein | - |
| C4J87_RS05740 (C4J87_1134) | recA | 1294071..1295129 (+) | 1059 | WP_005785454.1 | recombinase RecA | Machinery gene |
| C4J87_RS05745 (C4J87_1135) | recX | 1295138..1295605 (+) | 468 | WP_124366036.1 | recombination regulator RecX | - |
| C4J87_RS05750 (C4J87_1136) | - | 1295667..1296779 (-) | 1113 | WP_124366037.1 | TIGR00730 family Rossman fold protein | - |
| C4J87_RS05755 (C4J87_1137) | - | 1297064..1297498 (-) | 435 | WP_124366038.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| C4J87_RS05760 (C4J87_1138) | - | 1297677..1298396 (+) | 720 | WP_124366039.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| C4J87_RS05765 (C4J87_1140) | erdR | 1298648..1299298 (+) | 651 | WP_124366040.1 | response regulator transcription factor ErdR | - |
| C4J87_RS05770 (C4J87_1141) | - | 1299374..1299736 (+) | 363 | WP_003189051.1 | diacylglycerol kinase | - |
| C4J87_RS05775 (C4J87_1142) | - | 1299740..1300666 (-) | 927 | WP_010212678.1 | LysR family transcriptional regulator | - |
| C4J87_RS05780 (C4J87_1143) | fpr | 1300791..1301570 (+) | 780 | WP_003189055.1 | ferredoxin-NADP reductase | - |
| C4J87_RS05785 (C4J87_1144) | tsaA | 1301690..1302385 (-) | 696 | WP_124366041.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| C4J87_RS05790 (C4J87_1145) | - | 1302389..1302850 (-) | 462 | WP_124361554.1 | DUF1456 family protein | - |
| C4J87_RS05795 (C4J87_1146) | - | 1302921..1303631 (-) | 711 | WP_124366042.1 | rRNA pseudouridine synthase | - |
| C4J87_RS05800 (C4J87_1147) | - | 1303741..1304211 (-) | 471 | WP_124366043.1 | GNAT family N-acetyltransferase | - |
| C4J87_RS05805 (C4J87_1148) | rimO | 1304312..1305637 (-) | 1326 | WP_124366044.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| C4J87_RS05810 (C4J87_1149) | - | 1305768..1306793 (+) | 1026 | WP_124366045.1 | hypothetical protein | - |
| C4J87_RS05815 (C4J87_1150) | - | 1306790..1308409 (+) | 1620 | WP_124366046.1 | recombinase family protein | - |
| C4J87_RS26590 (C4J87_1151) | - | 1308477..1308749 (+) | 273 | WP_124366047.1 | DUF1654 domain-containing protein | - |
| C4J87_RS05825 (C4J87_1152) | - | 1308866..1309420 (+) | 555 | WP_124366048.1 | hypothetical protein | - |
| C4J87_RS05830 (C4J87_1153) | - | 1309424..1309666 (+) | 243 | WP_124366049.1 | hypothetical protein | - |
| C4J87_RS05835 (C4J87_1154) | - | 1309663..1309962 (+) | 300 | WP_122560722.1 | hypothetical protein | - |
| C4J87_RS05840 (C4J87_1155) | - | 1309994..1310698 (-) | 705 | WP_038449107.1 | XRE family transcriptional regulator | - |
| C4J87_RS05845 (C4J87_1156) | - | 1310849..1311079 (+) | 231 | WP_124366050.1 | Cro/CI family transcriptional regulator | - |
| C4J87_RS05850 (C4J87_1157) | - | 1311076..1311699 (+) | 624 | WP_124366051.1 | hypothetical protein | - |
| C4J87_RS05855 (C4J87_1158) | - | 1311705..1312631 (+) | 927 | WP_256679978.1 | hypothetical protein | - |
| C4J87_RS05860 (C4J87_1159) | - | 1313335..1313595 (-) | 261 | WP_038449110.1 | ogr/Delta-like zinc finger family protein | - |
| C4J87_RS05865 (C4J87_1160) | - | 1313668..1314537 (-) | 870 | WP_164487682.1 | phage portal protein | - |
| C4J87_RS05870 (C4J87_1161) | - | 1314449..1316506 (-) | 2058 | WP_124366052.1 | terminase large subunit domain-containing protein | - |
| C4J87_RS05875 (C4J87_1162) | - | 1316669..1317586 (+) | 918 | WP_124366053.1 | GPO family capsid scaffolding protein | - |
| C4J87_RS05880 (C4J87_1163) | - | 1317588..1318607 (+) | 1020 | WP_124366054.1 | phage major capsid protein, P2 family | - |
| C4J87_RS05885 (C4J87_1164) | gpM | 1318604..1319332 (+) | 729 | WP_124366055.1 | phage terminase small subunit | - |
| C4J87_RS05890 (C4J87_1165) | - | 1319431..1319901 (+) | 471 | WP_124366056.1 | head completion/stabilization protein | - |
| C4J87_RS05895 (C4J87_1166) | - | 1319898..1320347 (+) | 450 | WP_124366057.1 | phage tail protein | - |
| C4J87_RS05900 (C4J87_1167) | - | 1320337..1321017 (+) | 681 | WP_124366058.1 | virion morphogenesis protein | - |
| C4J87_RS05905 (C4J87_1168) | - | 1321029..1322150 (+) | 1122 | WP_124366059.1 | DUF2586 domain-containing protein | - |
| C4J87_RS05910 (C4J87_1169) | - | 1322157..1322606 (+) | 450 | WP_032895736.1 | phage protein | - |
| C4J87_RS05915 (C4J87_1170) | - | 1322606..1322824 (+) | 219 | WP_003235240.1 | TraR/DksA family transcriptional regulator | - |
| C4J87_RS05920 (C4J87_1171) | - | 1322821..1323027 (+) | 207 | WP_057701077.1 | hypothetical protein | - |
| C4J87_RS05925 (C4J87_1172) | - | 1323024..1323557 (+) | 534 | WP_124366060.1 | lysozyme | - |
| C4J87_RS05930 (C4J87_1173) | - | 1323557..1324033 (+) | 477 | WP_124366061.1 | lysis system i-spanin subunit Rz | - |
| C4J87_RS05935 (C4J87_1174) | - | 1324047..1324334 (+) | 288 | WP_124366062.1 | putative phage tail assembly chaperone | - |
| C4J87_RS26315 (C4J87_1175) | - | 1324355..1324498 (+) | 144 | WP_032862709.1 | hypothetical protein | - |
| C4J87_RS05940 (C4J87_1176) | - | 1324505..1326817 (+) | 2313 | WP_124366063.1 | phage tail tape measure protein | - |
| C4J87_RS05945 (C4J87_1177) | - | 1326814..1327131 (+) | 318 | WP_124366064.1 | DUF2590 family protein | - |
| C4J87_RS05950 (C4J87_1178) | - | 1327128..1328300 (+) | 1173 | WP_124366065.1 | baseplate J/gp47 family protein | - |
| C4J87_RS05955 (C4J87_1179) | - | 1328297..1328821 (+) | 525 | WP_032895744.1 | phage tail protein | - |
| C4J87_RS05960 (C4J87_1180) | - | 1328831..1331467 (+) | 2637 | WP_124366066.1 | phage tail protein | - |
| C4J87_RS05965 (C4J87_1181) | - | 1331470..1332108 (+) | 639 | WP_124366067.1 | hypothetical protein | - |
| C4J87_RS05970 (C4J87_1182) | - | 1332110..1333033 (+) | 924 | WP_124368940.1 | hypothetical protein | - |
| C4J87_RS05975 (C4J87_1183) | - | 1333030..1333581 (+) | 552 | WP_124366068.1 | DNA-binding protein | - |
| C4J87_RS05980 (C4J87_1184) | - | 1333578..1334282 (+) | 705 | WP_124366069.1 | hypothetical protein | - |
| C4J87_RS05985 (C4J87_1185) | - | 1334255..1335226 (+) | 972 | WP_124366070.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37624.19 Da Isoelectric Point: 5.2997
>NTDB_id=279645 C4J87_RS05740 WP_005785454.1 1294071..1295129(+) (recA) [Pseudomonas sp. R1-43-08]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTPAPDVKAAANREPVDEMEEADTDI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTPAPDVKAAANREPVDEMEEADTDI
Nucleotide
Download Length: 1059 bp
>NTDB_id=279645 C4J87_RS05740 WP_005785454.1 1294071..1295129(+) (recA) [Pseudomonas sp. R1-43-08]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCAATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGATATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCTCAGAAAATGGGCGCCACCTGCGCATTCGTCGATGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCAGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTACCCAAGGCAGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGATATCCGTCGTACCGGTGCGGTGAAAGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTGAAGAACAAGGTAGCCCCGCCTTTCCGCCAAGCAGAGTTCCAGATTCTTTATGGCAAAGGCAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTTGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGATATCGCCGCCACGCTTGAAAAG
CAGATTCGCGACAAGCTGCTGACCCCTGCGCCAGACGTCAAAGCCGCCGCCAACCGTGAGCCGGTTGACGAGATGGAAGA
AGCCGACACTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCAATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGATATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCTCAGAAAATGGGCGCCACCTGCGCATTCGTCGATGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCAGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTACCCAAGGCAGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGATATCCGTCGTACCGGTGCGGTGAAAGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTGAAGAACAAGGTAGCCCCGCCTTTCCGCCAAGCAGAGTTCCAGATTCTTTATGGCAAAGGCAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTTGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGATATCGCCGCCACGCTTGAAAAG
CAGATTCGCGACAAGCTGCTGACCCCTGCGCCAGACGTCAAAGCCGCCGCCAACCGTGAGCCGGTTGACGAGATGGAAGA
AGCCGACACTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.