Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   D9C16_RS11340 Genome accession   NZ_CP032861
Coordinates   2055481..2055915 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain N1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2050481..2060915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C16_RS11325 (D9C16_11325) poxB 2050880..2052604 (-) 1725 WP_014478872.1 pyruvate oxidase -
  D9C16_RS11330 (D9C16_11330) mutT 2052671..2053120 (-) 450 WP_014478871.1 8-oxo-dGTP diphosphatase MutT -
  D9C16_RS11335 (D9C16_11335) topB 2053233..2055416 (-) 2184 WP_014478870.1 DNA topoisomerase III -
  D9C16_RS11340 (D9C16_11340) lrpC 2055481..2055915 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  D9C16_RS11345 (D9C16_11345) ydzA 2056099..2056389 (+) 291 WP_014478869.1 DUF3817 domain-containing protein -
  D9C16_RS11350 (D9C16_11350) amj 2056434..2057243 (-) 810 WP_014478868.1 lipid II flippase Amj -
  D9C16_RS11355 (D9C16_11355) ydaG 2057749..2058171 (-) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  D9C16_RS11360 (D9C16_11360) ydaF 2058249..2058800 (-) 552 WP_014478866.1 GNAT family protein -
  D9C16_RS11365 (D9C16_11365) lyxE 2058888..2059390 (-) 503 Protein_2225 D-lyxose ketol-isomerase -
  D9C16_RS11370 (D9C16_11370) ydaD 2059406..2060266 (-) 861 WP_014478865.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=279639 D9C16_RS11340 WP_003246585.1 2055481..2055915(-) (lrpC) [Bacillus subtilis subsp. subtilis strain N1-1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=279639 D9C16_RS11340 WP_003246585.1 2055481..2055915(-) (lrpC) [Bacillus subtilis subsp. subtilis strain N1-1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1