Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C4J88_RS25450 Genome accession   NZ_CP027733
Coordinates   5486122..5486529 (-) Length   135 a.a.
NCBI ID   WP_124364796.1    Uniprot ID   -
Organism   Pseudomonas sp. R4-39-08     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5481122..5491529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J88_RS25435 (C4J88_5097) - 5483125..5485176 (-) 2052 WP_124408413.1 methyl-accepting chemotaxis protein -
  C4J88_RS25440 (C4J88_5098) - 5485173..5485697 (-) 525 WP_124408414.1 chemotaxis protein CheW -
  C4J88_RS25445 (C4J88_5099) pilH 5485710..5486075 (-) 366 WP_034116227.1 twitching motility response regulator PilH -
  C4J88_RS25450 (C4J88_5100) pilG 5486122..5486529 (-) 408 WP_124364796.1 twitching motility response regulator PilG Regulator
  C4J88_RS25455 (C4J88_5101) gshB 5486769..5487722 (+) 954 WP_124368684.1 glutathione synthase -
  C4J88_RS25460 (C4J88_5102) - 5487800..5488705 (+) 906 WP_124405543.1 energy transducer TonB -
  C4J88_RS25470 (C4J88_5103) - 5488894..5489463 (+) 570 WP_124408415.1 YqgE/AlgH family protein -
  C4J88_RS25475 (C4J88_5104) ruvX 5489463..5489900 (+) 438 WP_003213744.1 Holliday junction resolvase RuvX -
  C4J88_RS25480 (C4J88_5105) pyrR 5490049..5490555 (+) 507 WP_124408416.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14966.52 Da        Isoelectric Point: 7.3843

>NTDB_id=279635 C4J88_RS25450 WP_124364796.1 5486122..5486529(-) (pilG) [Pseudomonas sp. R4-39-08]
MEQHSNALRVMVIDDSKTIRRTAETLLKNMGCEVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKAYVPAFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=279635 C4J88_RS25450 WP_124364796.1 5486122..5486529(-) (pilG) [Pseudomonas sp. R4-39-08]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGACGATTCGAAAACGATCCGCCGCACCGCCGAGACGCTGTT
GAAGAACATGGGGTGCGAGGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCCGAATCGTGGACCATCACCCGCACA
TTATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCGCTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGTATCGTGGGTGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGGGTGCGATCAAGGCCTATGTGCCTGCCTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70.079

94.074

0.659

Multiple sequence alignment