Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4J88_RS23335 Genome accession   NZ_CP027733
Coordinates   5058330..5059697 (-) Length   455 a.a.
NCBI ID   WP_124368425.1    Uniprot ID   -
Organism   Pseudomonas sp. R4-39-08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5053330..5064697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J88_RS23320 (C4J88_4677) yjiA 5054635..5055594 (-) 960 WP_124408224.1 GTPase -
  C4J88_RS23325 (C4J88_4678) - 5055745..5055942 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  C4J88_RS23330 (C4J88_4679) - 5055958..5058024 (-) 2067 WP_124364489.1 carbon starvation CstA family protein -
  C4J88_RS23335 (C4J88_4680) radA 5058330..5059697 (-) 1368 WP_124368425.1 DNA repair protein RadA Machinery gene
  C4J88_RS23340 (C4J88_4681) - 5059733..5060281 (-) 549 WP_124408225.1 ankyrin repeat domain-containing protein -
  C4J88_RS23345 (C4J88_4682) katB 5060420..5061961 (-) 1542 WP_124368427.1 catalase KatB -
  C4J88_RS23350 (C4J88_4683) mscL 5062249..5062665 (+) 417 WP_124368428.1 large-conductance mechanosensitive channel protein MscL -
  C4J88_RS23355 (C4J88_4684) - 5062709..5063485 (-) 777 WP_124408226.1 ferredoxin--NADP reductase -
  C4J88_RS23360 (C4J88_4685) - 5063914..5064624 (+) 711 WP_124408227.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48759.29 Da        Isoelectric Point: 6.8987

>NTDB_id=279632 C4J88_RS23335 WP_124368425.1 5058330..5059697(-) (radA) [Pseudomonas sp. R4-39-08]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPAGRTGWTGQQAQIKTLAEVSVEEVPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPPGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=279632 C4J88_RS23335 WP_124368425.1 5058330..5059697(-) (radA) [Pseudomonas sp. R4-39-08]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCGGCGAGTG
CGGTGCGTGGAACACCCTGACTGAAACCATGATTGAAAGCGGTGGCGCTGCGGCCCCTGCCGGGCGCACCGGCTGGACCG
GGCAACAAGCGCAAATCAAGACCTTGGCCGAAGTCAGCGTCGAAGAGGTGCCGCGCTTCTCCACGGCCTCCGGTGAGCTG
GACCGGGTATTGGGCGGTGGCCTGGTGGACGGCTCCGTCGTGTTGATCGGCGGCGACCCGGGCATCGGTAAGTCCACGAT
CCTGCTGCAAACGCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGCGAGGAATCCCAGCAACAAGTGG
CGATGCGTGCTCGTCGCCTGGGCTTGCCCCAGGACCAACTGCGGGTCATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCGCGGATCGAGAAGCCAAAGGTCATGGTGATTGACTCGATCCAGACAATTTTCACCGAGCAACTGCAATCGGCCCC
TGGCGGCGTATCCCAGGTGCGTGAAAGTGCGGCGCTGTTGGTGCGCTATGCTAAGCAGAGCGGTACGGCGATCTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCGCTGGCCGGGCCGCGCGTGCTGGAACACATGGTGGATACCGTTTTGTATTTTGAG
GGTGAGTCCGATGGCCGCCTACGGTTGCTGCGGGCAGTGAAAAACCGCTTTGGCGCGGTGAACGAGTTGGGGGTGTTCGC
CATGACTGACCGGGGGCTGAAAGAAGTCTCCAATCCATCGGCGATTTTTCTTACCCGCGCCCAGGAGGAAGTCCCAGGCA
GCGTGGTGATGGCAACGTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTCCAGGCGCTTGTGGATGACAGCCATCTGGCC
AACCCGCGCCGGGTCACCCTTGGGCTGGATCAAAACCGCCTGGCGATGCTGCTGGCAGTGTTGCACCGCCATGGGGGTAT
TCCGACCCACGACCAGGACGTGTTCCTTAACGTGGTCGGCGGGGTCAAGGTGTTGGAGACCGCGTCTGATCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGTAACCGGCCCTTGCCCCATGATTTGCTGGTGTTTGGTGAAGTGGGCCTGTCGGGC
GAAGTGCGCCCGGTGCCCAGCGGCCAGGAGCGCTTGAAGGAAGCGGCCAAGCACGGCTTCAAACGCGCGATCGTGCCCAA
GGGCAATGCGCCAAAGGAAATGCCGCCGGGGTTGCAGGTGATTGGGGTCACGCGCCTGGAGCAAGCCTTGGATGCCTTGT
TTGAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(79-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.891

100

0.501
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47

Multiple sequence alignment