Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4J90_RS22850 Genome accession   NZ_CP027731
Coordinates   5013261..5014628 (-) Length   455 a.a.
NCBI ID   WP_124364490.1    Uniprot ID   -
Organism   Pseudomonas sp. R2-60-08W     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5008261..5019628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J90_RS22835 (C4J90_4596) yjiA 5009579..5010538 (-) 960 WP_124420883.1 GTPase -
  C4J90_RS22840 (C4J90_4598) - 5010675..5010872 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  C4J90_RS22845 (C4J90_4599) - 5010888..5012954 (-) 2067 WP_124364489.1 carbon starvation CstA family protein -
  C4J90_RS22850 (C4J90_4600) radA 5013261..5014628 (-) 1368 WP_124364490.1 DNA repair protein RadA Machinery gene
  C4J90_RS22855 (C4J90_4601) - 5014664..5015212 (-) 549 WP_124420884.1 ankyrin repeat domain-containing protein -
  C4J90_RS22860 (C4J90_4602) katB 5015351..5016892 (-) 1542 WP_124364492.1 catalase KatB -
  C4J90_RS22865 (C4J90_4603) mscL 5017180..5017596 (+) 417 WP_065910193.1 large-conductance mechanosensitive channel protein MscL -
  C4J90_RS22870 (C4J90_4604) - 5017640..5018416 (-) 777 WP_124364493.1 ferredoxin--NADP reductase -
  C4J90_RS22875 (C4J90_4606) - 5018846..5019556 (+) 711 WP_124421244.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48749.25 Da        Isoelectric Point: 6.8987

>NTDB_id=279582 C4J90_RS22850 WP_124364490.1 5013261..5014628(-) (radA) [Pseudomonas sp. R2-60-08W]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPAGRTGWTGQQAQIKTLAEVSVEEVPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPSGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=279582 C4J90_RS22850 WP_124364490.1 5013261..5014628(-) (radA) [Pseudomonas sp. R2-60-08W]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCGGGCCAGTGCGGCGAGTG
CGGTGCGTGGAACACCCTGACTGAAACCATGATTGAAAGCGGCGGCGCTGCGGCCCCTGCCGGGCGCACCGGCTGGACCG
GGCAACAAGCGCAGATCAAGACCTTGGCCGAAGTCAGCGTCGAAGAGGTGCCGCGCTTCTCCACGGCCTCCGGTGAGCTG
GACCGGGTATTGGGCGGTGGCCTGGTGGACGGCTCCGTCGTGTTGATCGGCGGCGACCCAGGCATCGGTAAGTCCACGAT
CCTGCTGCAAACGCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGCGAGGAATCCCAGCAACAAGTGG
CGATGCGCGCTCGTCGTCTGGGCTTGCCCCAGGACCAACTGCGGGTCATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCGCGGATCGAGAAGCCAAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCTGCCCC
TGGCGGCGTCTCCCAGGTGCGTGAAAGTGCGGCGCTGTTGGTGCGCTACGCCAAGCAGAGCGGTACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAAGGCGCGCTGGCCGGGCCGCGCGTGCTGGAACACATGGTGGATACCGTGCTGTATTTCGAA
GGTGAATCCGATGGCCGCCTTAGGTTGCTGCGGGCGGTGAAAAACCGCTTCGGCGCGGTGAACGAGTTGGGTGTGTTCGC
CATGACTGACCGGGGGCTGAAAGAAGTCTCCAATCCATCGGCGATTTTTCTTACCCGCGCCCAGGAAGAAGTCCCCGGCA
GCGTGGTGATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTGGATGACAGCCATCTGGCC
AACCCTCGCCGGGTCACACTTGGACTGGATCAAAACCGCCTGGCGATGCTGCTGGCAGTGTTGCACCGCCATGGGGGTAT
TCCGACCCACGACCAGGACGTGTTCCTTAACGTGGTCGGCGGGGTCAAGGTGTTGGAGACCGCGTCTGATCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGTAACCGGCCCTTGCCCCATGATTTGCTGGTGTTTGGTGAAGTGGGCCTGTCGGGC
GAAGTGCGCCCGGTGCCCAGTGGCCAGGAGCGCTTGAAGGAAGCGGCCAAGCACGGCTTCAAACGCGCGATCGTGCCCAA
GGGCAACGCGCCAAAGGAAATGCCGTCGGGGTTGCAGGTGATTGGGGTCACGCGCCTGGAGCAAGCCTTGGATGCACTGT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(79-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.891

100

0.501
  radA Streptococcus mitis SK321

47.059

100

0.475
  radA Streptococcus mitis NCTC 12261

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47

Multiple sequence alignment