Detailed information NTG0279562

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: D9C16_RS00430
• Genome accession: NZ_CP032861
• Coordinates: 67209..68336 (+)
• Length: 375 a.a.
• NCBI ID: WP_014480328.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain N1-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 62209..73336

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C16_RS00395 (D9C16_00395)	-	62366..62878 (-)	513	WP_014477426.1	hypothetical protein	-
D9C16_RS00400 (D9C16_00400)	cdiI	62950..63309 (-)	360	WP_014480334.1	ribonuclease toxin immunity protein CdiI	-
D9C16_RS00405 (D9C16_00405)	-	63406..63858 (-)	453	WP_014480333.1	SMI1/KNR4 family protein	-
D9C16_RS00410 (D9C16_00410)	-	63957..64397 (-)	441	WP_014480332.1	SMI1/KNR4 family protein	-
D9C16_RS00420 (D9C16_00420)	-	64800..65087 (-)	288	WP_014480331.1	hypothetical protein	-
D9C16_RS23045 (D9C16_00425)	-	65101..67027 (-)	1927	Protein_85	T7SS effector LXG polymorphic toxin	-
D9C16_RS00430 (D9C16_00430)	rapC	67209..68336 (+)	1128	WP_014480328.1	Rap family tetratricopeptide repeat protein	Regulator
D9C16_RS00440 (D9C16_00440)	-	69075..69470 (-)	396	WP_014480327.1	VOC family protein	-
D9C16_RS00445 (D9C16_00445)	-	70412..71302 (-)	891	WP_014480326.1	LysR family transcriptional regulator	-
D9C16_RS00450 (D9C16_00450)	fumC	71469..72856 (+)	1388	Protein_89	class II fumarate hydratase	-
D9C16_RS22730	-	73075..73287 (+)	213	Protein_90	recombinase family protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44149.36 Da
• Isoelectric Point: 6.0289

>NTDB_id=279562 D9C16_RS00430 WP_014480328.1 67209..68336(+) (rapC) [Bacillus subtilis subsp. subtilis strain N1-1]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=279562 D9C16_RS00430 WP_014480328.1 67209..68336(+) (rapC) [Bacillus subtilis subsp. subtilis strain N1-1]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-251)

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397