Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4J92_RS22860 Genome accession   NZ_CP027729
Coordinates   4983265..4984632 (-) Length   455 a.a.
NCBI ID   WP_124368425.1    Uniprot ID   -
Organism   Pseudomonas sp. R3-18-08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4978265..4989632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J92_RS22845 (C4J92_4563) yjiA 4979565..4980524 (-) 960 WP_124405340.1 GTPase -
  C4J92_RS22850 (C4J92_4564) - 4980680..4980877 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  C4J92_RS22855 (C4J92_4565) - 4980893..4982959 (-) 2067 WP_124364489.1 carbon starvation CstA family protein -
  C4J92_RS22860 (C4J92_4566) radA 4983265..4984632 (-) 1368 WP_124368425.1 DNA repair protein RadA Machinery gene
  C4J92_RS22865 (C4J92_4567) - 4984668..4985216 (-) 549 WP_124364491.1 ankyrin repeat domain-containing protein -
  C4J92_RS22870 (C4J92_4568) katB 4985355..4986896 (-) 1542 WP_124405341.1 catalase KatB -
  C4J92_RS22875 (C4J92_4569) mscL 4987184..4987600 (+) 417 WP_124368428.1 large-conductance mechanosensitive channel protein MscL -
  C4J92_RS22880 (C4J92_4570) - 4987644..4988420 (-) 777 WP_124405342.1 ferredoxin--NADP reductase -
  C4J92_RS22885 (C4J92_4571) - 4988850..4989560 (+) 711 WP_124405343.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48759.29 Da        Isoelectric Point: 6.8987

>NTDB_id=279534 C4J92_RS22860 WP_124368425.1 4983265..4984632(-) (radA) [Pseudomonas sp. R3-18-08]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPAGRTGWTGQQAQIKTLAEVSVEEVPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPPGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=279534 C4J92_RS22860 WP_124368425.1 4983265..4984632(-) (radA) [Pseudomonas sp. R3-18-08]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCGGCGAGTG
CGGTGCGTGGAACACCCTGACTGAAACCATGATTGAAAGCGGCGGCGCTGCGGCCCCTGCCGGGCGCACCGGCTGGACCG
GGCAACAAGCGCAGATCAAGACCTTGGCCGAAGTCAGCGTCGAAGAGGTGCCGCGCTTCTCCACGGCCTCCGGTGAGCTG
GACCGGGTATTGGGCGGTGGCCTGGTGGACGGCTCCGTCGTGTTGATCGGCGGCGACCCCGGCATCGGTAAGTCCACAAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGCGAGGAATCCCAGCAACAAGTGG
CGATGCGTGCTCGTCGCCTGGGCTTGCCCCAGGACCAACTGCGGGTCATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCGCGGATCGAGAAGCCAAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCTGCCCC
TGGCGGCGTCTCCCAGGTGCGTGAAAGTGCGGCGCTGTTGGTGCGCTACGCCAAGCAGAGCGGTACGGCGATCTTCCTGG
TTGGCCACGTGACCAAGGAAGGCGCGCTGGCCGGGCCGCGCGTGCTGGAACACATGGTGGATACCGTGCTGTATTTCGAA
GGGGAATCCGATGGCCGCCTTAGATTGCTGCGGGCGGTGAAAAACCGCTTTGGCGCGGTGAACGAGTTGGGTGTGTTCGC
CATGACTGACCGGGGGCTGAAAGAAGTCTCCAATCCGTCGGCGATTTTTCTTACCCGCGCCCAGGAAGAAGTCCCAGGCA
GCGTGGTGATGGCGACTTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTGGATGACAGCCATCTGGCC
AACCCGCGCCGGGTCACCCTTGGGCTGGATCAAAACCGCCTGGCGATGCTGCTGGCAGTGTTGCACCGCCATGGGGGTAT
TCCGACTCATGACCAGGACGTGTTCCTTAACGTGGTCGGCGGGGTCAAGGTGTTGGAGACCGCGTCTGACCTGGCGCTGA
TGGCGGCAGTGATGTCCAGCCTGCGTAACCGGCCATTGCCCCACGACCTGCTGGTGTTCGGTGAAGTGGGCCTGTCGGGC
GAAGTGCGCCCGGTGCCCAGCGGCCAGGAGCGCTTGAAGGAAGCGGCCAAGCACGGCTTCAAACGCGCGATCGTGCCCAA
GGGCAATGCGCCAAAGGAAATGCCGCCGGGGTTGCAGGTGATTGGGGTCACACGCCTGGAACAAGCGCTGGATGCCTTGT
TCGAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(79-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.891

100

0.501
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47

Multiple sequence alignment