Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   D9C14_RS17160 Genome accession   NZ_CP032860
Coordinates   3283735..3284166 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain SSJ-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3278735..3289166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C14_RS17140 (D9C14_17140) spoVS 3279295..3279555 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  D9C14_RS17145 (D9C14_17145) tdh 3279821..3280864 (+) 1044 WP_029726482.1 L-threonine 3-dehydrogenase -
  D9C14_RS17150 (D9C14_17150) kbl 3280877..3282055 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  D9C14_RS17155 (D9C14_17155) miaB 3282203..3283733 (+) 1531 Protein_3300 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  D9C14_RS17160 (D9C14_17160) ymcA 3283735..3284166 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  D9C14_RS17165 (D9C14_17165) cotE 3284428..3284973 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  D9C14_RS17170 (D9C14_17170) hexA 3285106..3287682 (+) 2577 WP_029726481.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=279531 D9C14_RS17160 WP_003231834.1 3283735..3284166(+) (ymcA) [Bacillus subtilis subsp. subtilis strain SSJ-1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=279531 D9C14_RS17160 WP_003231834.1 3283735..3284166(+) (ymcA) [Bacillus subtilis subsp. subtilis strain SSJ-1]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1