Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECSMS35_RS16220 Genome accession   NC_010498
Coordinates   3284891..3285367 (+) Length   158 a.a.
NCBI ID   WP_001424026.1    Uniprot ID   -
Organism   Escherichia coli SMS-3-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3279891..3290367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECSMS35_RS16185 (EcSMS35_3202) - 3280575..3281459 (+) 885 WP_000010402.1 GTPase -
  ECSMS35_RS16195 (EcSMS35_3204) - 3281662..3282342 (+) 681 WP_001282919.1 WYL domain-containing protein -
  ECSMS35_RS16200 (EcSMS35_3205) - 3282490..3283167 (+) 678 WP_001097302.1 hypothetical protein -
  ECSMS35_RS16205 (EcSMS35_3206) - 3283173..3283406 (+) 234 WP_001278287.1 DUF905 family protein -
  ECSMS35_RS16210 (EcSMS35_3207) - 3283496..3284314 (+) 819 WP_001175148.1 DUF932 domain-containing protein -
  ECSMS35_RS16215 (EcSMS35_3208) - 3284396..3284875 (+) 480 WP_000860076.1 antirestriction protein -
  ECSMS35_RS16220 (EcSMS35_3209) radC 3284891..3285367 (+) 477 WP_001424026.1 RadC family protein Machinery gene
  ECSMS35_RS16225 (EcSMS35_3210) - 3285430..3285651 (+) 222 WP_000692309.1 DUF987 domain-containing protein -
  ECSMS35_RS16230 (EcSMS35_3211) - 3285731..3286105 (+) 375 WP_001285415.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECSMS35_RS16235 (EcSMS35_3212) - 3286152..3286529 (+) 378 WP_000854735.1 TA system toxin CbtA family protein -
  ECSMS35_RS16240 (EcSMS35_3213) - 3286526..3287014 (+) 489 WP_000761676.1 DUF5983 family protein -
  ECSMS35_RS16245 (EcSMS35_3214) - 3287026..3287223 (+) 198 WP_000839291.1 DUF957 domain-containing protein -
  ECSMS35_RS16250 (EcSMS35_3215) - 3287308..3288174 (+) 867 WP_001280433.1 DUF4942 domain-containing protein -
  ECSMS35_RS16255 (EcSMS35_3216) - 3288246..3288509 (+) 264 WP_001143297.1 type II toxin-antitoxin system ParD family antitoxin -
  ECSMS35_RS16260 - 3288506..3288832 (+) 327 WP_000779482.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ECSMS35_RS16265 (EcSMS35_3217) - 3289308..3289478 (+) 171 Protein_3110 IS110 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17683.27 Da        Isoelectric Point: 6.9859

>NTDB_id=27953 ECSMS35_RS16220 WP_001424026.1 3284891..3285367(+) (radC) [Escherichia coli SMS-3-5]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=27953 ECSMS35_RS16220 WP_001424026.1 3284891..3285367(+) (radC) [Escherichia coli SMS-3-5]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCGGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGGCTTATCACTGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386