Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   D9C14_RS16145 Genome accession   NZ_CP032860
Coordinates   3077781..3078230 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain SSJ-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3072781..3083230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C14_RS16105 (D9C14_16105) ctaE 3072797..3073420 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  D9C14_RS16110 (D9C14_16110) ctaF 3073423..3073755 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  D9C14_RS16115 (D9C14_16115) ctaG 3073783..3074676 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  D9C14_RS16120 (D9C14_16120) ylbA 3074708..3075070 (-) 363 WP_003232238.1 YugN family protein -
  D9C14_RS16125 (D9C14_16125) ylbB 3075210..3075656 (+) 447 WP_003221362.1 CBS domain-containing protein -
  D9C14_RS16130 (D9C14_16130) ylbC 3075740..3076780 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  D9C14_RS16135 (D9C14_16135) ylbD 3077012..3077410 (+) 399 WP_003232233.1 YlbD family protein -
  D9C14_RS16140 (D9C14_16140) ylbE 3077426..3077665 (+) 240 WP_003232231.1 YlbE-like family protein -
  D9C14_RS16145 (D9C14_16145) ylbF 3077781..3078230 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  D9C14_RS16150 (D9C14_16150) ylbG 3078285..3078557 (+) 273 WP_015715839.1 YlbG family protein -
  D9C14_RS16155 (D9C14_16155) rsmD 3078880..3079434 (+) 555 WP_029726518.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  D9C14_RS16160 (D9C14_16160) coaD 3079439..3079924 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  D9C14_RS16165 (D9C14_16165) spoVV 3079935..3081161 (-) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  D9C14_RS16170 (D9C14_16170) ylbK 3081342..3082124 (+) 783 WP_003232221.1 patatin family protein -
  D9C14_RS16175 (D9C14_16175) sepM 3082126..3083151 (+) 1026 WP_029726516.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=279519 D9C14_RS16145 WP_003221370.1 3077781..3078230(+) (ylbF) [Bacillus subtilis subsp. subtilis strain SSJ-1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=279519 D9C14_RS16145 WP_003221370.1 3077781..3078230(+) (ylbF) [Bacillus subtilis subsp. subtilis strain SSJ-1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1