Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4J94_RS23540 Genome accession   NZ_CP027727
Coordinates   5156305..5157672 (-) Length   455 a.a.
NCBI ID   WP_032884669.1    Uniprot ID   A0A031J688
Organism   Pseudomonas sp. R5-89-07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5151305..5162672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J94_RS23520 (C4J94_4711) yjiA 5152239..5153198 (-) 960 WP_124388282.1 GTPase -
  C4J94_RS23525 (C4J94_4712) - 5153354..5153551 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  C4J94_RS23530 (C4J94_4713) - 5153567..5155633 (-) 2067 WP_124388283.1 carbon starvation CstA family protein -
  C4J94_RS23535 (C4J94_4714) - 5155808..5156176 (+) 369 WP_124388284.1 PilZ domain-containing protein -
  C4J94_RS23540 (C4J94_4715) radA 5156305..5157672 (-) 1368 WP_032884669.1 DNA repair protein RadA Machinery gene
  C4J94_RS23545 (C4J94_4716) - 5157708..5158256 (-) 549 WP_124388285.1 ankyrin repeat domain-containing protein -
  C4J94_RS23550 (C4J94_4717) - 5158395..5159936 (-) 1542 WP_124388286.1 catalase -
  C4J94_RS23555 (C4J94_4718) mscL 5160224..5160640 (+) 417 WP_124388287.1 large-conductance mechanosensitive channel protein MscL -
  C4J94_RS23560 (C4J94_4719) - 5160809..5161585 (-) 777 WP_124388288.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48759.29 Da        Isoelectric Point: 6.8987

>NTDB_id=279486 C4J94_RS23540 WP_032884669.1 5156305..5157672(-) (radA) [Pseudomonas sp. R5-89-07]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPPGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=279486 C4J94_RS23540 WP_032884669.1 5156305..5157672(-) (radA) [Pseudomonas sp. R5-89-07]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCGGCGAGTG
CGGTGCGTGGAACACCCTGACTGAAACCATGATTGAAAGCGGTGGTGCTGCGGCGCCGACCGGCCGCGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATCCCGCGCTTCTCCACGGCCTCCGGCGAGTTG
GACCGGGTATTGGGCGGTGGCCTGGTGGACGGCTCGGTCGTGTTGATCGGCGGCGACCCAGGCATCGGTAAATCCACGAT
CCTGTTGCAAACCCTATGCAGCATCGCCAGCCGCATGCCGGCGTTGTACGTCACCGGCGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGCCGACTGGGCTTGCCCCAGGACCAACTGCGGGTCATGACCGAAACCTGCATTGAAAGCATCATCGCC
ACGGCGCGCATCGAAAAGCCGAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAACTGCAGTCCGCCCC
TGGCGGCGTCTCCCAGGTACGTGAAAGTGCCGCGCTGTTGGTGCGCTATGCCAAGCAGAGCGGTACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAAGGCGCGCTGGCCGGGCCGCGCGTGCTGGAGCACATGGTGGACACCGTGCTGTATTTCGAA
GGCGAATCCGATGGCCGCCTGCGGTTGCTGCGGGCGGTGAAAAACCGCTTTGGCGCGGTGAACGAGTTGGGTGTGTTTGC
CATGACTGACCGGGGGCTCAAAGAGGTCTCCAACCCGTCGGCGATTTTTCTCACCCGCGCCCAGGAAGAAGTCCCCGGTA
GTGTGGTGATGGCGACGTGGGAAGGTACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATCTGGCC
AACCCGCGACGGGTCACCCTCGGTCTGGATCAGAACCGTCTGGCGATGCTGCTGGCGGTATTGCATCGCCATGGCGGGAT
TCCGACGCACGACCAGGACGTCTTCCTTAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACTGCCTCCGATTTGGCATTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCGCTGCCCCATGATCTGCTGGTGTTTGGCGAGGTGGGGCTGTCGGGC
GAAGTACGCCCGGTGCCCAGTGGCCAGGAGCGCTTGAAGGAAGCGGCCAAGCATGGCTTCAAACGCGCGATCGTGCCCAA
GGGCAATGCGCCGAAGGAAATGCCGCCGGGGTTGCAGGTGATTGGCGTGACGCGCCTGGAACAGGCCTTGGATGCGCTGT
TTGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031J688

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47

Multiple sequence alignment