Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D9C14_RS11780 Genome accession   NZ_CP032860
Coordinates   2258132..2259259 (-) Length   375 a.a.
NCBI ID   WP_038427490.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SSJ-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2253132..2264259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C14_RS11765 (D9C14_11765) dagK 2255158..2256069 (+) 912 WP_015715455.1 diacylglycerol kinase -
  D9C14_RS11770 (D9C14_11770) rlmD 2256326..2257711 (+) 1386 WP_015715456.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  D9C14_RS11775 (D9C14_11775) - 2257945..2258142 (-) 198 WP_015715457.1 hypothetical protein -
  D9C14_RS11780 (D9C14_11780) rapC 2258132..2259259 (-) 1128 WP_038427490.1 Rap family tetratricopeptide repeat protein Regulator
  D9C14_RS11785 (D9C14_11785) - 2259450..2259753 (-) 304 Protein_2250 hypothetical protein -
  D9C14_RS11790 (D9C14_11790) - 2259838..2260233 (-) 396 WP_015715460.1 immunity 22 family protein -
  D9C14_RS11795 (D9C14_11795) - 2260246..2262132 (-) 1887 WP_015715461.1 T7SS effector LXG polymorphic toxin -
  D9C14_RS11800 (D9C14_11800) - 2262344..2263366 (+) 1023 WP_038427493.1 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44361.07 Da        Isoelectric Point: 6.8170

>NTDB_id=279484 D9C14_RS11780 WP_038427490.1 2258132..2259259(-) (rapC) [Bacillus subtilis subsp. subtilis strain SSJ-1]
MGTISSPHVGIKINEWNRHIQKFNLTDAEMLKAEIERDIDIMEEDQDLLIYYQLIAFRHQLMIDYVIPSEGNQIELSEYL
KRIEGSNRKMEKLVEYYYYFFQGMFEFKEGNFLSAITFYQKAENTIPYISDEIERAEFYFKMAEVFYHMKQTHVSMHYSS
QAYNIYKTHDLYSVRRIQCHFVIAGNYDDLESHEKALPHLEQALKGARLLESKNKRIYGQALFNIGNCYLKMGELTKAAK
YMEKSILQFKKSNFNNLTQAYHDLALIYFLQHKQDQAMDCFRKGVRFACKFDDNLFKIMFEGLQALFIKKGEASILLNVF
NKLETSQGYPYMEELALLAAKFYTEIGQMDDSVICFKKMVHARKQIQRGDCLYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=279484 D9C14_RS11780 WP_038427490.1 2258132..2259259(-) (rapC) [Bacillus subtilis subsp. subtilis strain SSJ-1]
TTGGGCACGATTTCGTCTCCGCACGTTGGGATAAAAATTAATGAATGGAACCGGCATATTCAAAAGTTTAATCTGACAGA
TGCTGAAATGCTTAAAGCTGAGATCGAACGGGACATTGACATCATGGAAGAAGACCAAGACCTCTTGATTTACTATCAGC
TCATTGCATTTCGCCATCAGCTTATGATTGACTATGTGATTCCATCTGAAGGAAACCAAATAGAGTTATCAGAATATTTA
AAGAGAATTGAAGGCAGCAACAGGAAGATGGAGAAGCTCGTTGAATACTACTATTACTTTTTTCAAGGAATGTTTGAATT
CAAAGAGGGCAATTTCTTAAGTGCCATTACATTCTATCAAAAAGCGGAAAATACAATTCCTTATATTTCGGATGAAATCG
AGCGGGCGGAATTTTATTTTAAAATGGCTGAAGTGTTTTATCATATGAAACAAACCCACGTATCCATGCACTATTCTTCT
CAGGCGTATAACATCTATAAAACACACGACCTTTACTCAGTCCGCCGCATACAATGCCATTTTGTGATCGCAGGAAACTA
CGACGATTTAGAAAGTCATGAAAAGGCGCTCCCTCACCTTGAACAGGCACTAAAAGGCGCACGGCTTCTTGAAAGCAAAA
ACAAGCGGATTTACGGCCAAGCTTTATTCAATATCGGAAATTGTTATCTTAAAATGGGCGAATTGACGAAAGCAGCAAAA
TACATGGAGAAATCGATTCTCCAATTCAAAAAATCAAATTTCAACAACTTGACACAAGCTTACCACGATTTAGCCTTAAT
TTATTTTCTTCAACATAAACAAGACCAGGCAATGGATTGTTTCAGAAAAGGCGTACGCTTCGCATGTAAATTCGACGATA
ATCTATTTAAAATTATGTTTGAAGGATTGCAGGCGCTGTTTATCAAAAAAGGAGAAGCGTCCATTTTATTAAATGTTTTC
AACAAATTAGAGACATCCCAAGGATATCCTTATATGGAAGAGTTGGCATTATTAGCCGCAAAGTTTTATACTGAAATTGG
GCAGATGGATGATTCTGTTATCTGTTTCAAAAAGATGGTTCATGCCCGCAAACAAATTCAAAGAGGGGATTGTTTGTATG
AAATTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(3-64)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.421
  rapF Bacillus subtilis subsp. subtilis str. 168

39.05

100

0.395