Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D9C14_RS11095 Genome accession   NZ_CP032860
Coordinates   2118647..2119288 (+) Length   213 a.a.
NCBI ID   WP_003244318.1    Uniprot ID   P96686
Organism   Bacillus subtilis subsp. subtilis strain SSJ-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2113647..2124288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C14_RS11065 (D9C14_11065) ydfE 2114839..2115462 (-) 624 WP_038427424.1 flavin reductase family protein -
  D9C14_RS11070 (D9C14_11070) ydfF 2115552..2116232 (+) 681 WP_033883515.1 winged helix-turn-helix domain-containing protein -
  D9C14_RS11075 (D9C14_11075) ydfG 2116312..2116755 (-) 444 WP_014475936.1 carboxymuconolactone decarboxylase family protein -
  D9C14_RS11080 (D9C14_11080) - 2116841..2117020 (-) 180 WP_010886421.1 hypothetical protein -
  D9C14_RS11085 (D9C14_11085) - 2117017..2117160 (-) 144 WP_038427427.1 hypothetical protein -
  D9C14_RS11090 (D9C14_11090) ydfH 2117431..2118654 (+) 1224 WP_015252722.1 two-component system sensor histidine kinase YdfH -
  D9C14_RS11095 (D9C14_11095) vraR 2118647..2119288 (+) 642 WP_003244318.1 two-component system response regulator YdfI Regulator
  D9C14_RS11100 (D9C14_11100) pleJ 2119404..2121578 (+) 2175 WP_121572537.1 MMPL family transporter -
  D9C14_RS11105 (D9C14_11105) cesA 2121992..2122894 (-) 903 WP_038427431.1 carboxylesterase -
  D9C14_RS11110 (D9C14_11110) ydfK 2123097..2123786 (-) 690 WP_033883509.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23973.92 Da        Isoelectric Point: 5.4183

>NTDB_id=279482 D9C14_RS11095 WP_003244318.1 2118647..2119288(+) (vraR) [Bacillus subtilis subsp. subtilis strain SSJ-1]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=279482 D9C14_RS11095 WP_003244318.1 2118647..2119288(+) (vraR) [Bacillus subtilis subsp. subtilis strain SSJ-1]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAAGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTATTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCAAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96686

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362