Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4J95_RS16155 Genome accession   NZ_CP027726
Coordinates   3548939..3549574 (-) Length   211 a.a.
NCBI ID   WP_122676958.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain R4-35-08     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3543939..3554574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J95_RS16120 (C4J95_3175) - 3544311..3544982 (+) 672 WP_124358863.1 Bax inhibitor-1/YccA family protein -
  C4J95_RS16125 (C4J95_3176) murB 3545053..3546072 (-) 1020 WP_124358864.1 UDP-N-acetylmuramate dehydrogenase -
  C4J95_RS16130 (C4J95_3177) - 3546069..3546533 (-) 465 WP_124358865.1 low molecular weight protein-tyrosine-phosphatase -
  C4J95_RS16135 (C4J95_3178) kdsB 3546533..3547297 (-) 765 WP_057721828.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J95_RS16140 (C4J95_3179) - 3547294..3547479 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J95_RS16145 (C4J95_3180) lpxK 3547504..3548514 (-) 1011 WP_124358866.1 tetraacyldisaccharide 4'-kinase -
  C4J95_RS16150 (C4J95_3181) - 3548514..3548942 (-) 429 WP_124358867.1 ExbD/TolR family protein -
  C4J95_RS16155 (C4J95_3182) exbB 3548939..3549574 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J95_RS16160 (C4J95_3183) comA 3549684..3551909 (-) 2226 WP_124358868.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J95_RS16165 (C4J95_3184) - 3552044..3552559 (+) 516 WP_124358869.1 DUF2062 domain-containing protein -
  C4J95_RS16170 (C4J95_3185) - 3552563..3553921 (-) 1359 WP_124358870.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22930.10 Da        Isoelectric Point: 7.3615

>NTDB_id=279455 C4J95_RS16155 WP_122676958.1 3548939..3549574(-) (exbB) [Pseudomonas orientalis strain R4-35-08]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279455 C4J95_RS16155 WP_122676958.1 3548939..3549574(-) (exbB) [Pseudomonas orientalis strain R4-35-08]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAACTCGACAAGCAGAAACTCAAGGAGCTGCGCGCCAATTCGCCGTTGGGTGAAATCCTTGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCGCGCGGGTGATCCATGAACTGGAGCGCTACAT
CAACGCCCTTGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCTCGGGTATGACCACCAACGCCGCCGTGCTGGCCGGTGGTATTTCCAAGGCACTGATCACCACGGCC
GCAGGCCTGATGGTGGGCATCCCTTCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment