Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D9C14_RS05800 Genome accession   NZ_CP032860
Coordinates   1107048..1108181 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis subsp. subtilis strain SSJ-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1102048..1113181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C14_RS05760 (D9C14_05760) ywnA 1102217..1102618 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  D9C14_RS05765 (D9C14_05765) ureC 1102753..1104462 (-) 1710 WP_029726053.1 urease subunit alpha -
  D9C14_RS05770 (D9C14_05770) ureB 1104459..1104833 (-) 375 WP_015251023.1 urease subunit beta -
  D9C14_RS05775 (D9C14_05775) ureA 1104830..1105147 (-) 318 WP_003227724.1 urease subunit gamma -
  D9C14_RS05780 (D9C14_05780) - 1105338..1105498 (-) 161 Protein_1124 hypothetical protein -
  D9C14_RS22590 - 1105770..1105938 (-) 169 Protein_1125 urea ABC transporter substrate-binding protein -
  D9C14_RS05790 (D9C14_05790) csbD 1106152..1106340 (-) 189 WP_003227718.1 stress response protein CsbD -
  D9C14_RS05795 (D9C14_05795) - 1106413..1106892 (-) 480 WP_003244390.1 hypothetical protein -
  D9C14_RS05800 (D9C14_05800) rapC 1107048..1108181 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  D9C14_RS05810 (D9C14_05810) moaA 1108373..1109398 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  D9C14_RS05815 (D9C14_05815) fdhD 1109414..1110202 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  D9C14_RS05820 (D9C14_05820) - 1110449..1110610 (-) 162 WP_003227706.1 hypothetical protein -
  D9C14_RS05825 (D9C14_05825) ywmD 1110705..1111379 (-) 675 WP_029726055.1 VWA domain-containing protein -
  D9C14_RS05830 (D9C14_05830) - 1111432..1111572 (-) 141 WP_003227702.1 hypothetical protein -
  D9C14_RS05835 (D9C14_05835) ywmC 1111703..1112386 (-) 684 WP_024571497.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=279446 D9C14_RS05800 WP_003227715.1 1107048..1108181(-) (rapC) [Bacillus subtilis subsp. subtilis strain SSJ-1]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=279446 D9C14_RS05800 WP_003227715.1 1107048..1108181(-) (rapC) [Bacillus subtilis subsp. subtilis strain SSJ-1]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424