Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4J96_RS23125 Genome accession   NZ_CP027725
Coordinates   5074573..5075940 (-) Length   455 a.a.
NCBI ID   WP_032884669.1    Uniprot ID   A0A031J688
Organism   Pseudomonas orientalis strain R2-66-08W     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5069573..5080940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J96_RS23110 (C4J96_4625) yjiA 5070875..5071843 (-) 969 WP_124427614.1 GTPase -
  C4J96_RS23115 (C4J96_4626) - 5071998..5072195 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  C4J96_RS23120 (C4J96_4627) - 5072211..5074277 (-) 2067 WP_057724970.1 carbon starvation CstA family protein -
  C4J96_RS23125 (C4J96_4628) radA 5074573..5075940 (-) 1368 WP_032884669.1 DNA repair protein RadA Machinery gene
  C4J96_RS23130 (C4J96_4629) - 5075976..5076524 (-) 549 WP_124427615.1 ankyrin repeat domain-containing protein -
  C4J96_RS23135 (C4J96_4630) katB 5076663..5078204 (-) 1542 WP_124427616.1 catalase KatB -
  C4J96_RS23140 (C4J96_4631) mscL 5078492..5078908 (+) 417 WP_057724964.1 large-conductance mechanosensitive channel protein MscL -
  C4J96_RS23145 (C4J96_4632) - 5078950..5079726 (-) 777 WP_124427617.1 ferredoxin--NADP reductase -
  C4J96_RS23150 (C4J96_4633) - 5080154..5080864 (+) 711 WP_124427618.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48759.29 Da        Isoelectric Point: 6.8987

>NTDB_id=279438 C4J96_RS23125 WP_032884669.1 5074573..5075940(-) (radA) [Pseudomonas orientalis strain R2-66-08W]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPPGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=279438 C4J96_RS23125 WP_032884669.1 5074573..5075940(-) (radA) [Pseudomonas orientalis strain R2-66-08W]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCGGCGAGTG
CGGTGCGTGGAACACCCTTACTGAAACCATGATTGAAAGCGGTGGCGCCGCAGCCCCCACCGGTCGCGCCGGCTGGACCG
GGCAACAAGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTTGAAGAGATCCCGCGTTTCTCCACGGCTTCCGGCGAGCTG
GACCGGGTCTTGGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGTGACCCGGGCATCGGTAAATCCACGAT
CCTGCTGCAGACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGCGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGCCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGGATCGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACTGAGCAACTGCAATCAGCGCC
TGGCGGCGTATCCCAGGTGCGTGAAAGCGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCGCTGGCCGGGCCGCGAGTGCTGGAACATATGGTGGATACCGTGCTGTATTTCGAG
GGTGAGTCCGATGGCCGCCTGCGGTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTGAACGAGTTGGGTGTATTTGC
CATGACTGACAGGGGGCTCAAAGAAGTCTCCAACCCCTCGGCGATCTTTCTCACCCGCGCCCAGGAAGAAGTCCCGGGCA
GCGTGGTGATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTGGATGACAGCCATCTGGCC
AACCCACGGCGCGTAACCTTGGGGCTGGATCAGAACCGTCTGGCGATGCTGCTGGCGGTGTTGCATCGTCATGGTGGCAT
TCCGACTCACGATCAGGATGTTTTCCTCAACGTGGTGGGCGGGGTCAAGGTATTGGAGACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCATTGCCCCATGATTTGCTGGTGTTTGGCGAGGTCGGGCTGTCGGGC
GAAGTGCGTCCGGTGCCCAGCGGCCAGGAGCGCTTGAAAGAGGCGGCCAAGCATGGCTTCAAAAGGGCGATCGTGCCCAA
GGGCAATGCGCCGAAGGAAATGCCGCCAGGATTGCAGGTGATTGGGGTCACCCGCCTGGAACAAGCGTTGGATGCACTGT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031J688

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47

Multiple sequence alignment