Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C4J97_RS25435 Genome accession   NZ_CP027724
Coordinates   5567953..5568360 (-) Length   135 a.a.
NCBI ID   WP_124425320.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain L1-3-08     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5562953..5573360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J97_RS25420 (C4J97_5129) - 5564957..5567008 (-) 2052 WP_124425318.1 methyl-accepting chemotaxis protein -
  C4J97_RS25425 (C4J97_5130) - 5567005..5567529 (-) 525 WP_124425319.1 chemotaxis protein CheW -
  C4J97_RS25430 (C4J97_5131) pilH 5567542..5567907 (-) 366 WP_014720320.1 twitching motility response regulator PilH -
  C4J97_RS25435 (C4J97_5132) pilG 5567953..5568360 (-) 408 WP_124425320.1 twitching motility response regulator PilG Regulator
  C4J97_RS25440 (C4J97_5133) gshB 5568600..5569553 (+) 954 WP_124425321.1 glutathione synthase -
  C4J97_RS25445 (C4J97_5134) - 5569631..5570536 (+) 906 WP_124425322.1 energy transducer TonB -
  C4J97_RS25450 (C4J97_5135) - 5570730..5571299 (+) 570 WP_124425323.1 YqgE/AlgH family protein -
  C4J97_RS25455 (C4J97_5136) ruvX 5571299..5571736 (+) 438 WP_124425324.1 Holliday junction resolvase RuvX -
  C4J97_RS25460 (C4J97_5137) pyrR 5571893..5572399 (+) 507 WP_124425325.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14964.44 Da        Isoelectric Point: 7.3845

>NTDB_id=279417 C4J97_RS25435 WP_124425320.1 5567953..5568360(-) (pilG) [Pseudomonas orientalis strain L1-3-08]
MEQHSNALRVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSRDGLFDKAKARTVGVDQFLTKPFSKEELLGAIKAYVPAFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=279417 C4J97_RS25435 WP_124425320.1 5567953..5568360(-) (pilG) [Pseudomonas orientalis strain L1-3-08]
ATGGAACAGCATTCCAACGCCTTGAGGGTGATGGTGATCGACGATTCGAAAACGATCCGCCGCACCGCCGAGACGCTGTT
GAAGAACGTGGGGTGCGAGGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCCGGATCGTGGATCATCACCCGCACA
TTATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTACCAGACCTGTGCCCTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGCTGTCCTCCAGGGACGGCCTGTTCGACAAGGCCAAGGCGCGTACCGTGGGGGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGGGTGCGATCAAGGCCTATGTGCCTGCCTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

68.504

94.074

0.644

Multiple sequence alignment