Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4J97_RS23270 Genome accession   NZ_CP027724
Coordinates   5125577..5126944 (-) Length   455 a.a.
NCBI ID   WP_124425053.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain L1-3-08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5120577..5131944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J97_RS23255 (C4J97_4707) yjiA 5121886..5122845 (-) 960 WP_124425052.1 GTPase -
  C4J97_RS23260 (C4J97_4708) - 5123002..5123199 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  C4J97_RS23265 (C4J97_4709) - 5123215..5125281 (-) 2067 WP_057724970.1 carbon starvation CstA family protein -
  C4J97_RS23270 (C4J97_4710) radA 5125577..5126944 (-) 1368 WP_124425053.1 DNA repair protein RadA Machinery gene
  C4J97_RS23275 (C4J97_4711) - 5126980..5127528 (-) 549 WP_124425054.1 ankyrin repeat domain-containing protein -
  C4J97_RS23280 (C4J97_4712) katB 5127668..5129209 (-) 1542 WP_124425055.1 catalase KatB -
  C4J97_RS23285 (C4J97_4713) mscL 5129497..5129913 (+) 417 WP_057724964.1 large-conductance mechanosensitive channel protein MscL -
  C4J97_RS23290 (C4J97_4714) - 5129956..5130732 (-) 777 WP_124425056.1 ferredoxin--NADP reductase -
  C4J97_RS23295 (C4J97_4715) - 5131162..5131872 (+) 711 WP_124425057.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48727.23 Da        Isoelectric Point: 6.8987

>NTDB_id=279414 C4J97_RS23270 WP_124425053.1 5125577..5126944(-) (radA) [Pseudomonas orientalis strain L1-3-08]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=279414 C4J97_RS23270 WP_124425053.1 5125577..5126944(-) (radA) [Pseudomonas orientalis strain L1-3-08]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCGGCGAGTG
CGGTGCGTGGAACACCCTGACTGAAACCATGATTGAAAGCGGTGGCGCCGCAGCGCCCACCGGCCGCGCCGGCTGGACCG
GGCAACAAGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATCCCGCGTTTCTCCACGGCCTCCGGCGAGCTG
GACCGGGTATTGGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGTGACCCGGGCATCGGTAAATCCACGAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGCGAAGAGTCCCAGCAACAGGTGG
CCATGCGCGCCCGTCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGCATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCAGCGCC
GGGCGGCGTGTCCCAGGTGCGTGAAAGCGCGGCGCTGTTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTTCTGG
TCGGCCACGTGACCAAGGAAGGCGCGCTGGCCGGGCCGCGCGTGCTGGAACACATGGTGGATACCGTGCTGTATTTCGAG
GGTGAATCCGATGGCCGCCTGCGGTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTGAACGAGTTGGGTGTATTTGC
CATGACTGACAGGGGACTCAAAGAAGTCTCCAACCCCTCGGCGATCTTTCTCACCCGCGCCCAGGAAGAAGTCCCGGGCA
GCGTGGTGATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATCTGGCC
AACCCGCGACGGGTCACCCTCGGCCTGGATCAGAACCGCCTGGCCATGCTGCTGGCGGTGTTGCATCGCCATGGCGGCAT
TCCGACTCATGACCAGGACGTCTTCCTCAACGTGGTGGGCGGGGTCAAGGTGTTGGAGACCGCGTCCGACCTGGCATTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCATTGCCCCATGATTTGCTGGTGTTTGGCGAGGTCGGGCTGTCGGGC
GAAGTGCGTCCGGTGCCCAGCGGCCAAGAGCGCTTGAAAGAGGCGGCCAAGCATGGCTTCAAAAGGGCGATCGTGCCCAA
GGGCAATGCGCCGAAGGAGGCGCCGCCGGGGTTGCAGATTATTGCGGTGACACGTCTGGAACAGGCGTTGGATGCGTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466

Multiple sequence alignment