Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D9C12_RS21440 Genome accession   NZ_CP032857
Coordinates   3998878..4000011 (-) Length   377 a.a.
NCBI ID   WP_015251020.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain 2RL2-3     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3993878..4005011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C12_RS21400 (D9C12_21400) ywnA 3994006..3994407 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  D9C12_RS21405 (D9C12_21405) ureC 3994542..3996251 (-) 1710 WP_003243090.1 urease subunit alpha -
  D9C12_RS21410 (D9C12_21410) ureB 3996248..3996622 (-) 375 WP_003227726.1 urease subunit beta -
  D9C12_RS21415 (D9C12_21415) ureA 3996619..3996936 (-) 318 WP_014478236.1 urease subunit gamma -
  D9C12_RS21420 (D9C12_21420) - 3997130..3997252 (-) 123 Protein_4137 hypothetical protein -
  D9C12_RS21425 (D9C12_21425) - 3997499..3997681 (-) 183 WP_069837820.1 transporter substrate-binding protein -
  D9C12_RS21430 (D9C12_21430) csbD 3997982..3998170 (-) 189 WP_014481173.1 stress response protein CsbD -
  D9C12_RS21435 (D9C12_21435) - 3998244..3998723 (-) 480 WP_003244390.1 hypothetical protein -
  D9C12_RS21440 (D9C12_21440) rapC 3998878..4000011 (-) 1134 WP_015251020.1 response regulator aspartate phosphatase RapB Regulator
  D9C12_RS21450 (D9C12_21450) moaA 4000203..4001228 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  D9C12_RS21455 (D9C12_21455) fdhD 4001244..4002032 (-) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  D9C12_RS21460 (D9C12_21460) - 4002265..4002426 (-) 162 WP_003227706.1 hypothetical protein -
  D9C12_RS21465 (D9C12_21465) ywmD 4002521..4003195 (-) 675 WP_014481179.1 VWA domain-containing protein -
  D9C12_RS21470 (D9C12_21470) - 4003248..4003388 (-) 141 WP_014481180.1 hypothetical protein -
  D9C12_RS21475 (D9C12_21475) ywmC 4003519..4004202 (-) 684 WP_014481181.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45038.16 Da        Isoelectric Point: 4.7546

>NTDB_id=279406 D9C12_RS21440 WP_015251020.1 3998878..4000011(-) (rapC) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=279406 D9C12_RS21440 WP_015251020.1 3998878..4000011(-) (rapC) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCACTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAACATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424