Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4J98_RS15505 Genome accession   NZ_CP027723
Coordinates   3475228..3475863 (-) Length   211 a.a.
NCBI ID   WP_122676958.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain 8B     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3470228..3480863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J98_RS15470 (C4J98_3080) - 3470600..3471271 (+) 672 WP_053256786.1 Bax inhibitor-1/YccA family protein -
  C4J98_RS15475 (C4J98_3081) murB 3471342..3472361 (-) 1020 WP_124433140.1 UDP-N-acetylmuramate dehydrogenase -
  C4J98_RS15480 (C4J98_3082) - 3472358..3472822 (-) 465 WP_124433141.1 low molecular weight protein-tyrosine-phosphatase -
  C4J98_RS15485 (C4J98_3083) kdsB 3472822..3473586 (-) 765 WP_065933892.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J98_RS15490 (C4J98_3084) - 3473583..3473768 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J98_RS15495 (C4J98_3085) lpxK 3473793..3474803 (-) 1011 WP_124433142.1 tetraacyldisaccharide 4'-kinase -
  C4J98_RS15500 (C4J98_3086) - 3474803..3475231 (-) 429 WP_057721826.1 ExbD/TolR family protein -
  C4J98_RS15505 (C4J98_3087) exbB 3475228..3475863 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J98_RS15510 (C4J98_3088) comA 3475973..3478198 (-) 2226 WP_124433143.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J98_RS15515 (C4J98_3089) - 3478334..3478849 (+) 516 WP_065894963.1 DUF2062 domain-containing protein -
  C4J98_RS15520 (C4J98_3090) - 3478853..3480211 (-) 1359 WP_124433144.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22930.10 Da        Isoelectric Point: 7.3615

>NTDB_id=279383 C4J98_RS15505 WP_122676958.1 3475228..3475863(-) (exbB) [Pseudomonas orientalis strain 8B]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279383 C4J98_RS15505 WP_122676958.1 3475228..3475863(-) (exbB) [Pseudomonas orientalis strain 8B]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACCTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAACTCGACAAGCAGAAGCTCAAGGAACTGCGCGCCAATTCGCCGTTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCGCGCGGGTGATCCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCGTTGATTACCACGGCA
GCGGGCCTGATGGTGGGTATCCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment