Detailed information NTG0279366

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K11_RS26110
• Genome accession: NZ_CP027722
• Coordinates: 5796729..5798057 (+)
• Length: 442 a.a.
• NCBI ID: WP_009050935.1
• Uniprot ID: A0AB33WW27
• Organism: Pseudomonas chlororaphis subsp. aureofaciens strain C50
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5791729..5803057

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K11_RS26090 (C4K11_5302)	pgeF	5793228..5793953 (-)	726	WP_009050932.1	peptidoglycan editing factor PgeF	-
C4K11_RS26095 (C4K11_5303)	rluD	5793950..5794912 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K11_RS26100 (C4K11_5304)	-	5795065..5796087 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
C4K11_RS26105 (C4K11_5305)	-	5796222..5796455 (+)	234	WP_007924721.1	PP0621 family protein	-
C4K11_RS26110 (C4K11_5306)	pilR	5796729..5798057 (+)	1329	WP_009050935.1	sigma-54-dependent transcriptional regulator	Regulator
C4K11_RS26115 (C4K11_5307)	thiO	5798054..5799154 (-)	1101	WP_041987302.1	glycine oxidase ThiO	-
C4K11_RS26120 (C4K11_5308)	-	5799209..5799610 (-)	402	WP_041987304.1	type IV pilin protein	-
C4K11_RS26125 (C4K11_5309)	-	5799624..5802692 (-)	3069	WP_041987307.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48853.37 Da
• Isoelectric Point: 9.3790

>NTDB_id=279366 C4K11_RS26110 WP_009050935.1 5796729..5798057(+) (pilR) [Pseudomonas chlororaphis subsp. aureofaciens strain C50]
MSPQQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQRHRLRMPLA
ILSTCARQETAVRVLKAGAIDFLSKPVALARLRELLNGALPKSIPPKPVTGPLLGNSTAMHKLRGQIHKLAQSQASVYIS
GESGSGKELAARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279366 C4K11_RS26110 WP_009050935.1 5796729..5798057(+) (pilR) [Pseudomonas chlororaphis subsp. aureofaciens strain C50]
ATGAGCCCACAGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGTAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGTTGGAATTACTCGAGCATATCCAGCGCCACCGGCTGCGAATGCCACTGGCC
ATCCTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCGGGTCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAGCTACTGAACGGCGCCCTGCCCAAATCGATACCACCGAAGCCTGTTACTGGCCCCTTGC
TGGGCAATTCGACCGCCATGCACAAACTGCGTGGACAGATCCACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGCCGCCCGTGCGATTCACGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGGGCTATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCG
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCACTGGCA
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGACAGCAGGAGGTCCAGGTTGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAACTGGCGGTGCCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCACAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGCGCACACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (133-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.366	100	0.665
pilR	Acinetobacter baumannii strain A118	43.562	100	0.459