Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECSMS35_RS11375 Genome accession   NC_010498
Coordinates   2265074..2265550 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli SMS-3-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2260074..2270550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECSMS35_RS11330 (EcSMS35_2237) infA 2260902..2261120 (+) 219 WP_001040187.1 translation initiation factor IF-1 -
  ECSMS35_RS11340 (EcSMS35_2239) - 2261611..2262453 (-) 843 WP_001274547.1 DUF4942 domain-containing protein -
  ECSMS35_RS11345 (EcSMS35_2240) - 2262538..2262735 (-) 198 WP_000839253.1 DUF957 domain-containing protein -
  ECSMS35_RS11350 (EcSMS35_2241) - 2262752..2263240 (-) 489 WP_001054233.1 DUF5983 family protein -
  ECSMS35_RS11355 (EcSMS35_2242) - 2263237..2263620 (-) 384 WP_000854686.1 TA system toxin CbtA family protein -
  ECSMS35_RS11360 (EcSMS35_2243) - 2263697..2264077 (-) 381 WP_001360163.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECSMS35_RS11365 (EcSMS35_2244) - 2264088..2264771 (-) 684 WP_000086769.1 hypothetical protein -
  ECSMS35_RS11370 (EcSMS35_2245) - 2264790..2265011 (-) 222 WP_000692298.1 DUF987 domain-containing protein -
  ECSMS35_RS11375 (EcSMS35_2246) radC 2265074..2265550 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  ECSMS35_RS11380 (EcSMS35_2247) - 2265566..2266051 (-) 486 WP_000214307.1 antirestriction protein -
  ECSMS35_RS11385 (EcSMS35_2248) - 2266143..2266961 (-) 819 WP_001234732.1 DUF932 domain-containing protein -
  ECSMS35_RS11390 (EcSMS35_2249) - 2267288..2270134 (-) 2847 WP_000820472.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=27935 ECSMS35_RS11375 WP_001186726.1 2265074..2265550(-) (radC) [Escherichia coli SMS-3-5]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=27935 ECSMS35_RS11375 WP_001186726.1 2265074..2265550(-) (radC) [Escherichia coli SMS-3-5]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392