Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K12_RS27035 Genome accession   NZ_CP027721
Coordinates   6042159..6043526 (-) Length   455 a.a.
NCBI ID   WP_009050968.1    Uniprot ID   A0AB33WWE9
Organism   Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6037159..6048526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K12_RS27010 (C4K12_5523) - 6037997..6038194 (-) 198 WP_007930039.1 YbdD/YjiX family protein -
  C4K12_RS27015 (C4K12_5524) - 6038210..6040276 (-) 2067 WP_009045728.1 carbon starvation CstA family protein -
  C4K12_RS27020 (C4K12_5525) - 6040487..6040948 (+) 462 WP_009050965.1 isoprenylcysteine carboxylmethyltransferase family protein -
  C4K12_RS27025 (C4K12_5526) - 6041007..6041375 (+) 369 WP_009050966.1 PilZ domain-containing protein -
  C4K12_RS27030 (C4K12_5527) - 6041401..6042129 (-) 729 WP_009050967.1 hypothetical protein -
  C4K12_RS27035 (C4K12_5528) radA 6042159..6043526 (-) 1368 WP_009050968.1 DNA repair protein RadA Machinery gene
  C4K12_RS27040 (C4K12_5529) - 6043572..6044120 (-) 549 WP_041987328.1 ankyrin repeat domain-containing protein -
  C4K12_RS27045 (C4K12_5530) katB 6044308..6045849 (-) 1542 WP_009050970.1 catalase KatB -
  C4K12_RS27050 (C4K12_5531) mscL 6046136..6046540 (+) 405 WP_016703708.1 large-conductance mechanosensitive channel protein MscL -
  C4K12_RS27055 (C4K12_5532) - 6046593..6047369 (-) 777 WP_110175906.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48840.31 Da        Isoelectric Point: 7.1317

>NTDB_id=279341 C4K12_RS27035 WP_009050968.1 6042159..6043526(-) (radA) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR36]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPQGLRIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=279341 C4K12_RS27035 WP_009050968.1 6042159..6043526(-) (radA) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR36]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAATGGGCCGGCCAGTGCGGCGAATG
CGGAGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGTGGCGCCGCGGCCCCCAGCGGTCGCACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAGATTCCACGCTTTTCCACGGCTTCCGGCGAACTG
GACCGGGTGCTCGGCGGCGGTCTGGTCGACGGTTCGGTGGTGCTGATTGGCGGCGACCCGGGGATCGGCAAGTCGACCAT
TCTGTTACAGACCTTGTGCAACATCGCCACCCGCATGCCGGCGCTCTACGTCACAGGCGAAGAATCGCAGCAACAGGTGG
CGATGCGTGCCCGGCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCCCGGCAGGAGAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAACTGCAATCGGCCCC
CGGCGGGGTTTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGGGTCCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGTGAGTCCGACGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACCGATCGCGGCTTGAAAGAGGTTTCCAACCCTTCGGCGATCTTTCTCACCCGTGCCCAGGAAGAAGTCCCGGGCA
GCGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGTCACCTGGCC
AATCCGCGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGTCACGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCTTGCCCCACGATCTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAAGTACGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAGGCGGCCAAGCACGGTTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCCCCGAAAGAGCCGCCACAGGGCTTGCGGATCATTGCGGTAACCCGTCTGGAGCAGGCGCTGGATGCGCTGT
TCGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459
  radA Streptococcus pneumoniae Rx1

45.833

100

0.459
  radA Streptococcus pneumoniae D39

45.833

100

0.459
  radA Streptococcus pneumoniae R6

45.833

100

0.459
  radA Streptococcus pneumoniae TIGR4

45.833

100

0.459

Multiple sequence alignment