Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K12_RS09060 Genome accession   NZ_CP027721
Coordinates   2001744..2002379 (+) Length   211 a.a.
NCBI ID   WP_009047817.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR36     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1996744..2007379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K12_RS09040 (C4K12_1833) - 1996989..1997921 (+) 933 WP_009047814.1 ABC transporter ATP-binding protein -
  C4K12_RS09045 (C4K12_1834) - 1997918..1998697 (+) 780 WP_007931651.1 ABC transporter permease -
  C4K12_RS09050 (C4K12_1835) - 1998746..1999261 (-) 516 WP_009047815.1 DUF2062 domain-containing protein -
  C4K12_RS09055 (C4K12_1836) comA 1999410..2001641 (+) 2232 WP_028683133.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K12_RS09060 (C4K12_1837) exbB 2001744..2002379 (+) 636 WP_009047817.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K12_RS09065 (C4K12_1838) - 2002376..2002804 (+) 429 WP_009047818.1 biopolymer transporter ExbD -
  C4K12_RS09070 (C4K12_1839) lpxK 2002804..2003814 (+) 1011 WP_063429110.1 tetraacyldisaccharide 4'-kinase -
  C4K12_RS09075 (C4K12_1840) - 2003838..2004023 (+) 186 WP_007931663.1 Trm112 family protein -
  C4K12_RS09080 (C4K12_1841) kdsB 2004020..2004784 (+) 765 WP_009047820.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K12_RS09085 (C4K12_1842) - 2004784..2005248 (+) 465 WP_009047821.1 low molecular weight protein-tyrosine-phosphatase -
  C4K12_RS09090 (C4K12_1843) murB 2005245..2006264 (+) 1020 WP_009047822.1 UDP-N-acetylmuramate dehydrogenase -
  C4K12_RS09095 (C4K12_1844) - 2006513..2006983 (+) 471 WP_009047823.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22932.11 Da        Isoelectric Point: 7.4247

>NTDB_id=279331 C4K12_RS09060 WP_009047817.1 2001744..2002379(+) (exbB) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR36]
MWELVISGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279331 C4K12_RS09060 WP_009047817.1 2001744..2002379(+) (exbB) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR36]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAACGTCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCTCCACATCTGTTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTATCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGTTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863

Multiple sequence alignment