Detailed information NTG0279305

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K13_RS09030
• Genome accession: NZ_CP027720
• Coordinates: 1992828..1995059 (+)
• Length: 743 a.a.
• NCBI ID: WP_028683133.1
• Uniprot ID: A0A554PPT4
• Organism: Pseudomonas chlororaphis subsp. aureofaciens strain DSM 6698
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1987828..2000059

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K13_RS09005 (C4K13_1826)	-	1988949..1989608 (+)	660	WP_009047812.1	transglutaminase family protein	-
C4K13_RS09010 (C4K13_1827)	-	1989651..1990274 (+)	624	WP_038631107.1	glutathione S-transferase	-
C4K13_RS09015 (C4K13_1828)	-	1990407..1991339 (+)	933	WP_009047814.1	ABC transporter ATP-binding protein	-
C4K13_RS09020 (C4K13_1829)	-	1991336..1992115 (+)	780	WP_007931651.1	ABC transporter permease	-
C4K13_RS09025 (C4K13_1830)	-	1992164..1992679 (-)	516	WP_009047815.1	DUF2062 domain-containing protein	-
C4K13_RS09030 (C4K13_1831)	comA	1992828..1995059 (+)	2232	WP_028683133.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K13_RS09035 (C4K13_1832)	exbB	1995162..1995797 (+)	636	WP_009047817.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K13_RS09040 (C4K13_1833)	-	1995794..1996222 (+)	429	WP_009047818.1	biopolymer transporter ExbD	-
C4K13_RS09045 (C4K13_1834)	lpxK	1996222..1997232 (+)	1011	WP_041987217.1	tetraacyldisaccharide 4'-kinase	-
C4K13_RS09050 (C4K13_1835)	-	1997256..1997441 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K13_RS09055 (C4K13_1836)	kdsB	1997438..1998202 (+)	765	WP_009047820.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K13_RS09060 (C4K13_1837)	-	1998202..1998666 (+)	465	WP_041987220.1	low molecular weight protein-tyrosine-phosphatase	-
C4K13_RS09065 (C4K13_1838)	murB	1998663..1999682 (+)	1020	WP_009047822.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81285.43 Da
• Isoelectric Point: 10.1404

>NTDB_id=279305 C4K13_RS09030 WP_028683133.1 1992828..1995059(+) (comA) [Pseudomonas chlororaphis subsp. aureofaciens strain DSM 6698]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAQGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWHWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDVLAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAQHGALRLVL
GTYAEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279305 C4K13_RS09030 WP_028683133.1 1992828..1995059(+) (comA) [Pseudomonas chlororaphis subsp. aureofaciens strain DSM 6698]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCAGTGCTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCTTTTTTCCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGACGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGACTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGCCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGCCGCCACGCAGGAGAGCTGGCGTGCGCGCATTCGCCAACGCTTGCTGCAAGTCGA
TGCCCAGGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAGGATTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCTGCCGTAATGTATGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGTTGGCGTTCGCTTC
GGCCCTGGGGTACGGATTGCTGGCGGGCTTCGACGTGCCGGTGCGTCGCGCCTGTGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGGGCCTGGTGGCCGTTCCTGCTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCCCTG
GCCAGCCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTTGGCGGGCGTCTGGGGGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGTCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGGACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCCTGCTCTGGCTGGCCGGTGGTTTGCTGGATTTATTGTT
CCGCGGTCTGGCGCTATTGGCTGCCCAATGGCCGGCGTGGATAGCACCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGGGCCTTTCTGCTGTTGTTGCCCGCGGGTGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGCTGCCATACGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAGGGGCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGCCCGCGTTTTGGTGATTCCGACCTGGGCGCCCGGGTGGTACTGC
CATCGTTGCGCAAGCTGGGCATCGCGCGCCTCGACCTGATGCTGCTCAGTCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAATGGCACTGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAATGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGACGTCCTGGCGGAA
CGAGCATTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGTTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGCAGCACGGAGCGCTGCGGTTGGTGCTG
GGCACATACGCCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

3D structure

• AlphaFold DB: A0A554PPT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624