Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D9C12_RS05460 Genome accession   NZ_CP032857
Coordinates   1050103..1051233 (+) Length   376 a.a.
NCBI ID   WP_014479091.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain 2RL2-3     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1045103..1056233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C12_RS05440 (D9C12_05440) yeeF 1045194..1047200 (-) 2007 WP_046380835.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  D9C12_RS05445 (D9C12_05445) - 1047367..1047705 (+) 339 WP_069837346.1 hypothetical protein -
  D9C12_RS05450 (D9C12_05450) - 1047718..1048638 (+) 921 WP_046380836.1 DUF5655 domain-containing protein -
  D9C12_RS05455 (D9C12_05455) - 1048795..1049955 (+) 1161 WP_069837347.1 lysozyme inhibitor LprI family protein -
  D9C12_RS05460 (D9C12_05460) rapC 1050103..1051233 (+) 1131 WP_014479091.1 response regulator aspartate phosphatase RapH Regulator
  D9C12_RS05465 (D9C12_05465) phrH 1051223..1051396 (+) 174 WP_069837348.1 phosphatase RapH inhibitor PhrH -
  D9C12_RS05470 (D9C12_05470) yeeI 1051556..1052275 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  D9C12_RS05475 (D9C12_05475) yeeK 1052409..1052855 (+) 447 WP_046380839.1 spore coat protein YeeK -
  D9C12_RS05480 (D9C12_05480) yezE 1052970..1053554 (+) 585 WP_046380840.1 TetR/AcrR family transcriptional regulator -
  D9C12_RS05485 (D9C12_05485) yesE 1053634..1054080 (+) 447 WP_046380841.1 nuclear transport factor 2 family protein -
  D9C12_RS05490 (D9C12_05490) yesF 1054077..1054939 (+) 863 Protein_1016 NAD(P)H-binding protein -
  D9C12_RS05495 (D9C12_05495) cotJA 1055069..1055317 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  D9C12_RS05500 (D9C12_05500) cotJB 1055301..1055564 (+) 264 WP_003219491.1 spore coat protein CotJB -
  D9C12_RS05505 (D9C12_05505) cotJC 1055579..1056148 (+) 570 WP_014479096.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44030.39 Da        Isoelectric Point: 5.9937

>NTDB_id=279295 D9C12_RS05460 WP_014479091.1 1050103..1051233(+) (rapC) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQKMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=279295 D9C12_RS05460 WP_014479091.1 1050103..1051233(+) (rapC) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGAAGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAGCCTTACGGAAATCGTCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCAGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGACGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTGCGTTTTATCGGAAAGTGCTAAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402