Detailed information NTG0279263

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K15_RS26630
• Genome accession: NZ_CP027718
• Coordinates: 5947662..5948990 (+)
• Length: 442 a.a.
• NCBI ID: WP_124339107.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain Q16
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5942662..5953990

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K15_RS26610 (C4K15_5407)	pgeF	5944163..5944888 (-)	726	WP_124339106.1	peptidoglycan editing factor PgeF	-
C4K15_RS26615 (C4K15_5408)	rluD	5944885..5945847 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K15_RS26620 (C4K15_5409)	-	5946000..5947022 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
C4K15_RS26625 (C4K15_5410)	-	5947157..5947390 (+)	234	WP_007924721.1	PP0621 family protein	-
C4K15_RS26630 (C4K15_5411)	pilR	5947662..5948990 (+)	1329	WP_124339107.1	sigma-54 dependent transcriptional regulator	Regulator
C4K15_RS26635 (C4K15_5412)	thiO	5948987..5950087 (-)	1101	WP_124339108.1	glycine oxidase ThiO	-
C4K15_RS26640 (C4K15_5413)	-	5950142..5950543 (-)	402	WP_038575642.1	type IV pilin protein	-
C4K15_RS26645 (C4K15_5414)	-	5950557..5953628 (-)	3072	WP_124335572.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48753.23 Da
• Isoelectric Point: 8.3262

>NTDB_id=279263 C4K15_RS26630 WP_124339107.1 5947662..5948990(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain Q16]
MSPRQKVLIVDDDPGVREYLEISLGRMQHHTCSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCPHQETAVQALKAGAIDFLSKPVTLARLRELLNGTLPKSIPPKPVTGPLLGDSTAMHKLRGQIGKLAQSQASVYIS
GESGSGKELVARAIHDQGPRAGRGFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLCLTPNSAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279263 C4K15_RS26630 WP_124339107.1 5947662..5948990(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain Q16]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTCGGCAGGAT
GCAGCACCATACCTGCAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCCCCCACCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GACCCTGGCGCGCCTGCGCGAGCTGCTGAACGGCACCCTGCCCAAATCGATACCACCGAAGCCTGTGACCGGGCCTTTGC
TGGGCGATTCGACCGCCATGCATAAGCTGCGCGGGCAGATCGGCAAGCTGGCCCAGAGTCAGGCCTCGGTCTATATCAGT
GGAGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGACCAGGGACCACGAGCCGGCCGGGGCTTCGTGCC
GATCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGACCTCTACTACCGCC
TGAACGTGATCGAGCTGGCGGTGCCACCGCTAAGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATACTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGATC
TATGCCTGACGCCCAATAGCGCCCACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.667	100	0.679
pilR	Acinetobacter baumannii strain A118	43.791	100	0.455