Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K16_RS26725 Genome accession   NZ_CP027717
Coordinates   5938165..5939532 (-) Length   455 a.a.
NCBI ID   WP_009050968.1    Uniprot ID   A0AB33WWE9
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5933165..5944532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K16_RS26700 (C4K16_5422) - 5934004..5934201 (-) 198 WP_007930039.1 YbdD/YjiX family protein -
  C4K16_RS26705 (C4K16_5423) - 5934217..5936283 (-) 2067 WP_038575596.1 carbon starvation CstA family protein -
  C4K16_RS26710 (C4K16_5424) - 5936493..5936954 (+) 462 WP_038575595.1 isoprenylcysteine carboxylmethyltransferase family protein -
  C4K16_RS26715 (C4K16_5425) - 5937013..5937381 (+) 369 WP_124335577.1 PilZ domain-containing protein -
  C4K16_RS26720 (C4K16_5426) - 5937407..5938135 (-) 729 WP_081359693.1 hypothetical protein -
  C4K16_RS26725 (C4K16_5427) radA 5938165..5939532 (-) 1368 WP_009050968.1 DNA repair protein RadA Machinery gene
  C4K16_RS26730 (C4K16_5428) - 5939578..5940126 (-) 549 WP_038575592.1 ankyrin repeat domain-containing protein -
  C4K16_RS26735 (C4K16_5429) katB 5940199..5941740 (-) 1542 WP_009050970.1 catalase KatB -
  C4K16_RS26740 (C4K16_5430) mscL 5942027..5942440 (+) 414 WP_038575590.1 large-conductance mechanosensitive channel protein MscL -
  C4K16_RS26745 (C4K16_5431) - 5942494..5943270 (-) 777 WP_124337255.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48840.31 Da        Isoelectric Point: 7.1317

>NTDB_id=279237 C4K16_RS26725 WP_009050968.1 5938165..5939532(-) (radA) [Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPQGLRIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=279237 C4K16_RS26725 WP_009050968.1 5938165..5939532(-) (radA) [Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAATGGGCCGGCCAGTGCGGCGAATG
CGGAGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGCGGCGCCGCGGCCCCCAGCGGTCGCACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAAATTCCACGCTTTTCCACGGCTTCCGGCGAACTG
GACCGGGTGCTCGGTGGCGGTCTGGTCGACGGTTCGGTGGTGCTGATTGGCGGCGACCCGGGGATCGGCAAGTCGACCAT
TCTGCTGCAGACCTTGTGCAACATCGCCACCCGCATGCCGGCGCTCTACGTCACCGGCGAAGAATCGCAGCAACAGGTGG
CGATGCGTGCCCGGCGCTTGGGCCTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGTATCGAAACCATCATCGCC
ACGGCCCGGCAGGAGAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAATTGCAATCGGCCCC
CGGCGGGGTTTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGGGTCCTCGAGCATATGGTCGACACCGTGCTGTATTTCGAA
GGTGAGTCCGATGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACCGATCGCGGCCTGAAAGAGGTTTCCAACCCGTCGGCGATCTTTCTCACCCGTGCCCAGGAAGAAGTCCCGGGCA
GCGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AACCCACGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCATGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCTTGCCCCACGATCTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAAGTACGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAGGCGGCCAAGCACGGTTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCCCCGAAAGAGCCGCCACAGGGCTTGCGGATCATTGCGGTAACCCGTCTGGAACAGGCGCTGGATGCGCTGT
TCGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459
  radA Streptococcus pneumoniae Rx1

45.833

100

0.459
  radA Streptococcus pneumoniae D39

45.833

100

0.459
  radA Streptococcus pneumoniae R6

45.833

100

0.459
  radA Streptococcus pneumoniae TIGR4

45.833

100

0.459

Multiple sequence alignment