Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D9C11_RS18645 Genome accession   NZ_CP032855
Coordinates   3463254..3464390 (+) Length   378 a.a.
NCBI ID   WP_080333377.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3458254..3469390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS18625 (D9C11_18625) yjnA 3458675..3459439 (-) 765 WP_095010685.1 sulfite exporter TauE/SafE family protein -
  D9C11_RS18630 (D9C11_18630) - 3459754..3461106 (-) 1353 WP_014478984.1 IS1182 family transposase -
  D9C11_RS18635 (D9C11_18635) bstD 3461245..3461709 (-) 465 WP_121591704.1 DinB family protein -
  D9C11_RS18640 (D9C11_18640) yjoB 3461858..3463108 (+) 1251 Protein_3585 ATPase YjoB -
  D9C11_RS18645 (D9C11_18645) rapC 3463254..3464390 (+) 1137 WP_080333377.1 response regulator aspartate phosphatase RapA Regulator
  D9C11_RS18650 (D9C11_18650) phrA 3464380..3464514 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  D9C11_RS18655 (D9C11_18655) yjpA 3464545..3464802 (-) 258 WP_121591705.1 YciI family protein -
  D9C11_RS18660 (D9C11_18660) xlyB 3464924..3465877 (+) 954 WP_041333906.1 N-acetylmuramoyl-L-alanine amidase -
  D9C11_RS18665 (D9C11_18665) yjqA 3465916..3466293 (-) 378 WP_014476529.1 PH domain-containing protein -
  D9C11_RS18670 (D9C11_18670) pghB 3466399..3467001 (+) 603 WP_121591706.1 poly-gamma-glutamate hydrolase family protein -
  D9C11_RS18675 (D9C11_18675) - 3467003..3467518 (+) 516 Protein_3592 manganese catalase family protein -
  D9C11_RS18680 (D9C11_18680) xkdA 3467562..3468158 (-) 597 WP_015715727.1 ImmA/IrrE family metallo-endopeptidase -
  D9C11_RS18685 (D9C11_18685) xre 3468321..3468662 (-) 342 WP_017695142.1 HTH-type transcriptional regulator Xre -
  D9C11_RS18690 (D9C11_18690) - 3468841..3469020 (+) 180 WP_015715728.1 hypothetical protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44947.14 Da        Isoelectric Point: 4.7582

>NTDB_id=279232 D9C11_RS18645 WP_080333377.1 3463254..3464390(+) (rapC) [Bacillus subtilis subsp. subtilis strain PJ-7]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKSIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPAKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=279232 D9C11_RS18645 WP_080333377.1 3463254..3464390(+) (rapC) [Bacillus subtilis subsp. subtilis strain PJ-7]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGAGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATTGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGATTATTATTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAGCATTGACACAGAATCGGTCTCA
CACACATTTCAATTTCTAGAAGAACATATGCTGTATCCTTATATTGAGGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGCAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

45.213

99.471

0.45
  rapF Bacillus subtilis subsp. subtilis str. 168

41.425

100

0.415