Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D9C11_RS17855 Genome accession   NZ_CP032855
Coordinates   3340000..3341853 (+) Length   617 a.a.
NCBI ID   WP_205589324.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3335000..3346853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS17820 (D9C11_17820) yjbC 3335672..3336250 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  D9C11_RS17825 (D9C11_17825) spx 3336431..3336826 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  D9C11_RS17830 (D9C11_17830) yjbE 3336869..3337525 (-) 657 WP_014479447.1 TerC family protein -
  D9C11_RS17835 (D9C11_17835) - 3337695..3337835 (+) 141 WP_119122854.1 hypothetical protein -
  D9C11_RS17840 (D9C11_17840) mecA 3337802..3338458 (+) 657 WP_014479448.1 adaptor protein MecA Regulator
  D9C11_RS17845 (D9C11_17845) - 3338453..3338575 (-) 123 WP_021479547.1 hypothetical protein -
  D9C11_RS17850 (D9C11_17850) coiA 3338649..3339770 (+) 1122 WP_250622001.1 competence protein CoiA Machinery gene
  D9C11_RS17855 (D9C11_17855) pepF 3340000..3341853 (+) 1854 WP_205589324.1 oligoendopeptidase F Regulator
  D9C11_RS17860 (D9C11_17860) - 3341867..3342034 (-) 168 WP_003244944.1 hypothetical protein -
  D9C11_RS17870 (D9C11_17870) spxH 3342348..3343247 (-) 900 WP_024573348.1 protease adaptor protein SpxH -
  D9C11_RS17875 (D9C11_17875) bhbI 3343244..3343642 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  D9C11_RS17880 (D9C11_17880) cwlQ 3343897..3344631 (-) 735 WP_250621958.1 bifunctional muramidase/murein lytic transglycosylase -
  D9C11_RS17885 (D9C11_17885) yjbK 3344646..3345218 (-) 573 WP_015252351.1 CYTH domain-containing protein -
  D9C11_RS17890 (D9C11_17890) - 3345343..3345711 (+) 369 WP_024573346.1 hypothetical protein -
  D9C11_RS17895 (D9C11_17895) yjbM 3345740..3346375 (+) 636 WP_003245294.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 71011.05 Da        Isoelectric Point: 5.3751

>NTDB_id=279231 D9C11_RS17855 WP_205589324.1 3340000..3341853(+) (pepF) [Bacillus subtilis subsp. subtilis strain PJ-7]
MAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLY
TYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEK
EEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFL
KAGSSQYPIDVLKKAGVDMTSPEPIEAACTMFEEKLDEMEELLMKVKQSQKSKPVRK

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=279231 D9C11_RS17855 WP_205589324.1 3340000..3341853(+) (pepF) [Bacillus subtilis subsp. subtilis strain PJ-7]
ATGGCTGAGGAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGACTTGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAA
AGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGATGGAGCGGCTGGGTAGGCTGTAC
ACATATGCGCATATGCGCTCTGACCAGGATACTGGGAACTCCTTTTACCAGGGGCTGAATGACAAGGCGGGAAACCTGTA
TACACAGGCCGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTC
TTGAAAAAGAAGAATTAAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAACGTCCGCATGTGCTGAGCGAGAAG
GAAGAGGCACTGCTTGCTGAAGCCTCCGAGGTACTGGGGTCATCTTCAAATACATTCAGCGTGTTAAATAACGCAGATAT
AACGTTTCCATCCATTAAAGACGAAGATGGGAATGAAAAACAGATCACTCACGGCAACTTTATTAATTTCTTGGAAAGTG
AAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATAAAAACACAATGGCCACGACG
CTAAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTACAAGTCCGCGCGTGAGGCTGCGCTTTCTAA
CAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATAAGCATTTGCCGCTCCTGCACCGCTATATTG
CGCTAAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGATGCTGGGATG
AAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTCGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAA
AGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAACGCAATGGGGCTTATTCATCAGGAGCTTACG
GCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTCTTTACGCTTGTGCACGAGTTTGGACATTCC
GTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATACGGCAATTACAGCATCTTTGTCGCGGAAGTTGCCTCTAC
GACAAATGAAGCGCTCCTTGGCGAATATTTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATATTCTCAACCATA
TGCTTGAGGGCTTCAGGGGAACGGTTTTCAGACAAACGATGTTCGCTGAATTTGAACATCTGATTCATACAAAGGCGCAA
GAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAATGTCTATTACGACCTGAATAAAAAGTATTTTGGCGACGGCATGGT
GATTGATAAGGAAATCGGCCTAGAATGGTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCGACAG
GGTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGGTTGACCGTTATATTGACTTCCTG
AAAGCGGGAAGCTCACAATACCCGATTGATGTCCTGAAAAAAGCGGGTGTTGATATGACGTCTCCAGAGCCAATCGAAGC
CGCGTGCACAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGTCAAGCAGTCTCAAAAAAGTAAGC
CTGTGCGGAAATGA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(211-589)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.653

96.272

0.468