Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   D9C11_RS16955 Genome accession   NZ_CP032855
Coordinates   3170949..3173840 (+) Length   963 a.a.
NCBI ID   WP_121591999.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3165949..3178840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS16930 (D9C11_16930) yhaR 3166363..3167130 (+) 768 WP_029726320.1 enoyl-CoA hydratase -
  D9C11_RS16935 (D9C11_16935) yhzD 3167151..3167336 (-) 186 WP_003233264.1 YhzD family protein -
  D9C11_RS16940 (D9C11_16940) yhaQ 3167463..3168359 (+) 897 WP_041338159.1 ABC transporter ATP-binding protein -
  D9C11_RS16945 (D9C11_16945) yhaP 3168352..3169611 (+) 1260 WP_121591592.1 ABC transporter permease -
  D9C11_RS16950 (D9C11_16950) yhaO 3169718..3170944 (+) 1227 WP_121591593.1 exonuclease SbcCD subunit D -
  D9C11_RS16955 (D9C11_16955) sbcE 3170949..3173840 (+) 2892 WP_121591999.1 DNA repair/recombination ATPase SbcE Machinery gene
  D9C11_RS16960 (D9C11_16960) yhaM 3173914..3174858 (+) 945 WP_003245698.1 3'-5' exoribonuclease YhaM -
  D9C11_RS16965 (D9C11_16965) yhaL 3174983..3175195 (+) 213 WP_003233252.1 sporulation protein YhaL -
  D9C11_RS16970 (D9C11_16970) prsA 3175235..3176119 (-) 885 WP_041052769.1 peptidylprolyl isomerase -
  D9C11_RS16975 (D9C11_16975) yhzE1 3176279..3176365 (+) 87 WP_003327753.1 sporulation protein YhzE1 -
  D9C11_RS16980 (D9C11_16980) yhzE2 3176490..3176576 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  D9C11_RS16985 (D9C11_16985) - 3176629..3176811 (-) 183 WP_024571667.1 hypothetical protein -
  D9C11_RS16990 (D9C11_16990) yhaJ 3176919..3177437 (-) 519 WP_121591594.1 DUF3267 domain-containing protein -
  D9C11_RS16995 (D9C11_16995) yhaI 3177645..3177986 (+) 342 WP_009966921.1 YhaI family protein -
  D9C11_RS17000 (D9C11_17000) scoC 3177983..3178594 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 963 a.a.        Molecular weight: 111108.16 Da        Isoelectric Point: 6.3302

>NTDB_id=279214 D9C11_RS16955 WP_121591999.1 3170949..3173840(+) (sbcE) [Bacillus subtilis subsp. subtilis strain PJ-7]
MTALRIISLHIYQYGKFSNRTFHFSASPVQVIYGLNEAGKTTMMSFIESMLFGFPKTKKYEPKTGGIYGGVLEAEHPEYG
VLKIERTKGTAEKLSVYTEKGEVKQGDVLKQLFQGTDRSLYKAIYSFDVFGLQEIHAFNRDKIGEFLLFSSLFGAEAVSK
LDSRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEADEAGYHQLLGEKRTLEARLAAAETELKETAGHIRMIEGL
IERKPLLNEKATLEQVIAEFPEHAGQFPADGLHQLEKYESHLHPKSAQLEALRVKMAELDKQRQKLIPNKELLAKETLIQ
ELSAGFHMYQSWGEQLAAIQAQLRQTSAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRKRQLDETFE
LARQELEDAEKAVRAASSAILENSQRKDKEAALRAYDETQGQHQEQAKLREQLTFFERQQAKQKKTVIAAGMLFIVLFSL
LQQWIPAISFGAALIVYWLVSGKSSSRNSRETRQPMTDISPAEAEMLREALWEDDRNKQHLLTQRAALQQKEAAYERVIQ
QFEQWEAEMAPSFTQVERFMNELGFKEDPSFLLDAYSLMKDVKKEVKKKHELTIEAGRLKKHRRTFEERVSMLLPVNQSQ
DISISDALHTLRKNIEREKEIEKQKKEIETDIHYTKEQMLELEQEIQYFHAQIEQLFAAAAAKDRDAFFAIADISRQLKD
TENKLHHVNAQLQGGYPEELELADSNTLSELKDKQFVENERKERLTEEIEQLRSQIALLSVKQEQLEASGMVSDLKLQTE
MQKERVKETAKKWASIQMVKQVIRNKLERHKKIELPRLLETAGEFFRPLTDGNYQTIYFSETDDSIMVMHRDGTVYHAEE
LSQGTCEQLYTAIRFALAVTRQGGSKLPFQLDDSFVHFDQERLKRVLHVLYDLSEGGRQILYFTCHEHVKDAFHSSQIIH
LVS

Nucleotide


Download         Length: 2892 bp        

>NTDB_id=279214 D9C11_RS16955 WP_121591999.1 3170949..3173840(+) (sbcE) [Bacillus subtilis subsp. subtilis strain PJ-7]
GTGACAGCTTTGCGAATTATATCTTTACACATCTACCAATATGGAAAATTTTCTAATCGAACCTTTCATTTTTCCGCCTC
TCCTGTCCAAGTTATCTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTCATTGAAAGCATGCTGTTCGGTT
TTCCGAAAACGAAAAAATATGAACCGAAAACAGGCGGTATCTACGGCGGTGTTCTCGAAGCTGAGCATCCTGAGTATGGG
GTGCTGAAGATCGAACGGACGAAAGGGACTGCCGAAAAACTAAGTGTGTACACAGAAAAGGGCGAAGTAAAGCAGGGAGA
TGTTTTAAAGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATATTCGTTCGACGTATTCGGGCTGCAGG
AAATTCACGCCTTTAATCGGGACAAGATAGGGGAATTTTTGCTCTTTTCCAGCCTGTTTGGTGCTGAAGCCGTATCAAAG
CTTGATTCAAGGCTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAATTGAATCAGGAGCTGGA
AACGCTTAAGCAGCTGGCAGTGAAGCTAAAACAGGCTGAAGCAGATGAAGCGGGCTATCATCAGCTTCTCGGGGAAAAAC
GAACGCTTGAAGCCCGCCTTGCAGCCGCGGAAACCGAATTGAAAGAGACGGCGGGACATATCCGAATGATTGAGGGATTG
ATTGAGCGAAAACCATTGCTAAATGAAAAAGCGACACTCGAACAGGTGATTGCAGAATTTCCGGAACATGCAGGACAATT
TCCTGCTGACGGACTGCATCAGCTGGAAAAATATGAATCCCATCTGCACCCGAAATCAGCACAGCTTGAGGCGCTTCGGG
TAAAGATGGCGGAGTTGGACAAACAGAGGCAAAAGCTTATCCCCAATAAAGAACTATTGGCGAAAGAAACGCTGATACAA
GAGCTTTCGGCAGGGTTTCATATGTACCAATCCTGGGGAGAACAGCTGGCTGCCATTCAGGCACAGCTGCGCCAGACGTC
TGCGCAGACAGCGGCAGGGCTGGAACAGCTCAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGATT
ATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGGCAAGAGACAGAAAACGGCAGCTTGACGAGACGTTTGAA
CTTGCCCGGCAAGAGCTGGAAGACGCGGAAAAGGCCGTTCGTGCCGCTTCGTCCGCGATTCTTGAAAACAGCCAAAGAAA
AGATAAAGAAGCAGCTCTTAGAGCATATGATGAAACACAGGGGCAGCACCAAGAGCAAGCGAAGCTCAGAGAACAGCTAA
CGTTTTTTGAAAGACAGCAGGCTAAACAGAAAAAGACTGTCATTGCAGCTGGTATGTTGTTCATCGTTCTCTTTTCTCTG
CTGCAGCAATGGATTCCCGCCATAAGTTTCGGCGCTGCACTTATTGTGTATTGGCTTGTTTCAGGAAAATCGTCTTCTCG
AAACAGCCGAGAGACAAGACAGCCCATGACGGATATTTCACCAGCAGAAGCCGAAATGCTTAGAGAAGCGTTATGGGAGG
ATGACCGCAATAAGCAGCACCTTCTCACACAGCGTGCAGCGCTCCAGCAAAAAGAGGCGGCGTATGAAAGGGTCATCCAG
CAGTTTGAACAGTGGGAAGCCGAAATGGCGCCGTCCTTTACACAGGTTGAGCGTTTTATGAATGAGCTCGGATTTAAGGA
AGATCCATCATTTTTGCTTGATGCATACAGCTTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACCA
TAGAAGCAGGCAGGCTGAAAAAGCACCGGAGAACATTCGAAGAACGCGTCAGTATGCTTCTTCCCGTGAATCAGAGTCAG
GATATCTCCATTTCGGACGCCCTTCACACATTGCGGAAAAACATTGAACGTGAAAAAGAAATTGAGAAGCAAAAAAAGGA
AATTGAAACAGATATTCATTATACAAAGGAACAGATGCTTGAACTTGAGCAAGAAATACAGTATTTCCACGCACAGATTG
AACAGTTATTTGCCGCGGCTGCTGCAAAAGACAGAGATGCGTTTTTTGCCATAGCCGACATCAGCAGGCAATTGAAGGAT
ACGGAGAACAAGCTTCATCACGTAAACGCACAGCTTCAAGGCGGGTACCCGGAGGAACTTGAACTGGCGGATTCCAATAC
GCTTTCTGAATTGAAAGATAAGCAATTTGTTGAGAATGAAAGAAAAGAGCGGCTGACTGAGGAGATCGAGCAGCTCCGCA
GCCAAATCGCACTGCTCTCAGTCAAACAGGAACAATTAGAGGCTTCGGGAATGGTCTCAGACCTCAAGCTTCAAACCGAA
ATGCAAAAAGAACGTGTGAAAGAAACGGCTAAAAAATGGGCCTCCATACAAATGGTCAAACAGGTGATCAGAAACAAATT
GGAGCGGCATAAAAAAATCGAGCTTCCGCGCCTTCTAGAGACGGCAGGAGAATTCTTCCGCCCTCTGACTGACGGAAACT
ACCAAACCATTTATTTTTCCGAAACGGATGATTCGATCATGGTTATGCATCGAGATGGAACTGTCTATCATGCGGAAGAG
CTGTCACAAGGGACGTGTGAACAGCTGTATACAGCGATCCGATTTGCTTTGGCCGTTACGCGCCAGGGTGGGTCAAAGCT
TCCGTTCCAGCTTGACGACAGTTTTGTTCATTTTGATCAGGAAAGGCTGAAACGTGTATTACATGTTCTGTATGATTTAT
CTGAAGGCGGTAGGCAGATTTTGTATTTTACATGCCATGAGCACGTAAAAGATGCATTTCATAGCAGCCAAATCATCCAT
TTGGTGTCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(5-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

99.065

100

0.991

Multiple sequence alignment