Detailed information NTG0279212

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: D9C11_RS16540
• Genome accession: NZ_CP032855
• Coordinates: 3085019..3086191 (+)
• Length: 390 a.a.
• NCBI ID: WP_121591574.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain PJ-7
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3080019..3091191

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C11_RS16515 (D9C11_16515)	yddF	3080109..3080435 (+)	327	WP_041904620.1	YddF family protein	-
D9C11_RS16520 (D9C11_16520)	-	3080439..3082856 (+)	2418	WP_121591571.1	CD3337/EF1877 family mobilome membrane protein	-
D9C11_RS16525 (D9C11_16525)	cwlT	3082853..3083842 (+)	990	WP_121591572.1	bifunctional lytic transglycosylase/C40 family peptidase	-
D9C11_RS16530 (D9C11_16530)	-	3083857..3084363 (+)	507	WP_121591573.1	hypothetical protein	-
D9C11_RS16535 (D9C11_16535)	-	3084417..3084809 (+)	393	WP_205589313.1	cystatin-like fold lipoprotein	-
D9C11_RS16540 (D9C11_16540)	rapF	3085019..3086191 (+)	1173	WP_121591574.1	Rap family tetratricopeptide repeat protein	Regulator
D9C11_RS16545 (D9C11_16545)	-	3086456..3086902 (-)	447	WP_026113638.1	hypothetical protein	-
D9C11_RS16550 (D9C11_16550)	-	3087052..3087543 (+)	492	WP_017695410.1	YhcN/YlaJ family sporulation lipoprotein	-
D9C11_RS16560 (D9C11_16560)	yhcQ	3088564..3089225 (-)	662	Protein_3172	spore coat protein	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 46122.62 Da
• Isoelectric Point: 6.0012

>NTDB_id=279212 D9C11_RS16540 WP_121591574.1 3085019..3086191(+) (rapF) [Bacillus subtilis subsp. subtilis strain PJ-7]
MRGVLDKDKIPYDEVTKKLNEWYTHIKNDHLDQAKLIKKEVEKDLKNMEESKDALLYYQLLEFRHELLVNYMNSEKTEEL
KTSYLAMKKLEDQGNVTGMLEYYFHFFMGMYEFRRKKLTAAITSYRKAEAKLSEVDDEIEKAEFFFKVSYVYYYMKQTYF
SLNYAYRALEIYQRYDDYFIQRLRCQFVLGGNFIDSLEYEKALDTFMEALKIAEEIKIDYLIGMAHINIGICFDELKDYK
SASSHLKKALDLLEVSDHSFVAKTLFILTHVKIKQGDKESAGVYFQKGHEFVKKTNDAEYTAKFKILEGLYFSNGEYELI
SEAFAYFDSMKMYADLENYAVEVAQFFHRKQDFQRSSEYYMLSVEARNKIKKGEIINETQSGHIGSSGVN

Nucleotide

• Length: 1173 bp

>NTDB_id=279212 D9C11_RS16540 WP_121591574.1 3085019..3086191(+) (rapF) [Bacillus subtilis subsp. subtilis strain PJ-7]
TTGCGAGGTGTTTTAGATAAAGATAAAATTCCGTATGACGAAGTTACCAAAAAATTAAATGAATGGTACACTCATATAAA
GAATGATCATCTGGATCAAGCTAAATTAATAAAAAAAGAAGTTGAAAAAGATTTAAAAAATATGGAAGAAAGTAAAGATG
CATTACTATATTATCAATTGCTAGAATTCCGCCATGAATTATTAGTTAATTATATGAATTCAGAAAAGACGGAAGAATTA
AAAACCTCATATCTCGCAATGAAGAAGTTAGAAGATCAAGGTAATGTTACTGGAATGTTGGAATATTATTTTCATTTCTT
TATGGGGATGTATGAATTCAGAAGAAAAAAACTAACTGCGGCAATAACTTCTTATAGAAAAGCAGAAGCTAAATTAAGTG
AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATATGTTTATTACTATATGAAGCAAACATACTTT
TCGCTTAACTATGCCTATAGAGCTCTTGAAATATATCAAAGGTATGATGATTACTTTATACAGAGATTAAGATGTCAATT
TGTATTAGGTGGAAACTTTATTGACTCCCTAGAATATGAAAAGGCATTGGATACATTTATGGAAGCGTTAAAAATTGCGG
AAGAAATTAAAATTGATTATTTAATTGGGATGGCACACATCAACATAGGTATTTGCTTTGATGAGTTAAAAGATTACAAA
AGTGCATCAAGTCATCTAAAAAAGGCGTTGGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTGCGAAAACTCTTTTTAT
TTTAACACATGTAAAGATCAAGCAAGGTGACAAAGAATCAGCTGGTGTCTATTTTCAAAAAGGACATGAGTTCGTAAAAA
AAACAAATGACGCTGAATATACTGCTAAATTTAAAATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAATTGATT
AGTGAGGCTTTTGCATATTTTGATTCAATGAAAATGTATGCAGATTTAGAGAACTATGCTGTTGAAGTGGCGCAATTTTT
TCATCGGAAACAGGATTTTCAACGCTCAAGTGAATATTATATGTTGAGTGTTGAAGCAAGAAACAAAATTAAAAAAGGAG
AGATTATTAATGAAACTCAGTCGGGTCATATTGGCAGTAGCGGTGTTAACTAG

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (198-254)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (9-69)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	38.095	96.923	0.369
rapC	Bacillus subtilis subsp. subtilis str. 168	37.302	96.923	0.362