Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   D9C11_RS13700 Genome accession   NZ_CP032855
Coordinates   2563130..2563564 (+) Length   144 a.a.
NCBI ID   WP_103330339.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2558130..2568564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS13670 (D9C11_13670) ydaD 2558782..2559642 (+) 861 WP_121591440.1 SDR family oxidoreductase -
  D9C11_RS13675 (D9C11_13675) lyxE 2559658..2560161 (+) 504 WP_088272170.1 D-lyxose ketol-isomerase -
  D9C11_RS13680 (D9C11_13680) ydaF 2560250..2560801 (+) 552 WP_041337761.1 GNAT family protein -
  D9C11_RS13685 (D9C11_13685) ydaG 2560879..2561301 (+) 423 WP_095843480.1 pyridoxamine 5'-phosphate oxidase family protein -
  D9C11_RS13690 (D9C11_13690) amj 2561801..2562610 (+) 810 WP_103330340.1 lipid II flippase Amj -
  D9C11_RS13695 (D9C11_13695) ydzA 2562655..2562945 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  D9C11_RS13700 (D9C11_13700) lrpC 2563130..2563564 (+) 435 WP_103330339.1 transcriptional regulator LrpC Machinery gene
  D9C11_RS13705 (D9C11_13705) topB 2563629..2565812 (+) 2184 WP_088272171.1 DNA topoisomerase III -
  D9C11_RS13710 (D9C11_13710) mutT 2565925..2566374 (+) 450 WP_017697018.1 8-oxo-dGTP diphosphatase MutT -
  D9C11_RS13715 (D9C11_13715) poxB 2566441..2568073 (+) 1633 Protein_2644 pyruvate oxidase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16484.04 Da        Isoelectric Point: 7.7037

>NTDB_id=279205 D9C11_RS13700 WP_103330339.1 2563130..2563564(+) (lrpC) [Bacillus subtilis subsp. subtilis strain PJ-7]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTFPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=279205 D9C11_RS13700 WP_103330339.1 2563130..2563564(+) (lrpC) [Bacillus subtilis subsp. subtilis strain PJ-7]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTTCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

99.306

100

0.993