Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K24_RS26355 Genome accession   NZ_CP027715
Coordinates   5831838..5833205 (-) Length   455 a.a.
NCBI ID   WP_007930034.1    Uniprot ID   A0AAX2EB22
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain M12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5826838..5838205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K24_RS26330 (C4K24_5354) - 5827677..5827874 (-) 198 WP_007930039.1 YbdD/YjiX family protein -
  C4K24_RS26335 (C4K24_5355) - 5827890..5829956 (-) 2067 WP_038575596.1 carbon starvation CstA family protein -
  C4K24_RS26340 (C4K24_5356) - 5830166..5830627 (+) 462 WP_038575595.1 isoprenylcysteine carboxylmethyltransferase family protein -
  C4K24_RS26345 (C4K24_5357) - 5830686..5831054 (+) 369 WP_023969440.1 PilZ domain-containing protein -
  C4K24_RS26350 (C4K24_5358) - 5831080..5831808 (-) 729 WP_081359693.1 hypothetical protein -
  C4K24_RS26355 (C4K24_5359) radA 5831838..5833205 (-) 1368 WP_007930034.1 DNA repair protein RadA Machinery gene
  C4K24_RS26360 (C4K24_5360) - 5833251..5833799 (-) 549 WP_124309611.1 ankyrin repeat domain-containing protein -
  C4K24_RS26365 (C4K24_5361) katB 5833872..5835413 (-) 1542 WP_124309612.1 catalase KatB -
  C4K24_RS26370 (C4K24_5362) mscL 5835700..5836113 (+) 414 WP_038575590.1 large-conductance mechanosensitive channel protein MscL -
  C4K24_RS26375 (C4K24_5363) - 5836167..5836943 (-) 777 WP_081359692.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48809.29 Da        Isoelectric Point: 7.1317

>NTDB_id=279184 C4K24_RS26355 WP_007930034.1 5831838..5833205(-) (radA) [Pseudomonas chlororaphis subsp. aurantiaca strain M12]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPPGLRIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=279184 C4K24_RS26355 WP_007930034.1 5831838..5833205(-) (radA) [Pseudomonas chlororaphis subsp. aurantiaca strain M12]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGCCAGTGCGGTGAATG
CGGAGCCTGGAATACCCTGACCGAAACCATGGTGGAAAGCGGCGGCGCCGCGGCCCCCAGCGGTCGCACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAAATTCCACGCTTTTCCACGGCTTCCGGCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTGGTCGACGGTTCGGTGGTGCTGATTGGCGGCGACCCGGGGATCGGCAAGTCGACCAT
TCTGCTGCAGACCTTGTGCAACATCGCGACCCGCATGCCGGCGCTCTACGTCACCGGCGAAGAATCGCAGCAACAGGTGG
CGATGCGTGCCCGGCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGTATCGAAACCATCATCGCC
ACGGCCCGGCAGGAGAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAATTGCAATCGGCCCC
CGGCGGGGTTTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGGCCACGGGTCCTCGAGCATATGGTCGACACCGTGCTGTATTTCGAA
GGTGAGTCCGACGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTATTCGG
CATGACCGATCGCGGCTTGAAAGAGGTTTCCAACCCGTCGGCGATCTTTCTCACCCGTGCCCAGGAAGAAGTCCCGGGCA
GCGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AATCCGCGGCGGGTCACCCTGGGACTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGCCATGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCTTGCCCCACGATCTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAAGTACGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAGGCGGCCAAACACGGTTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCCCCGAAAGAGCCGCCACCGGGCTTGCGGATCATTGCGGTAACCCGTCTGGAACAGGCGCTGGATGCGCTGT
TCGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus pneumoniae Rx1

45.87

100

0.464
  radA Streptococcus pneumoniae R6

45.87

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.87

100

0.464
  radA Streptococcus pneumoniae D39

45.87

100

0.464
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459

Multiple sequence alignment