Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K25_RS25910 Genome accession   NZ_CP027714
Coordinates   5749355..5750722 (-) Length   455 a.a.
NCBI ID   WP_007930034.1    Uniprot ID   A0AAX2EB22
Organism   Pseudomonas chlororaphis strain ATCC 17415     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5744355..5755722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K25_RS25885 (C4K25_5256) - 5745204..5745401 (-) 198 WP_009045727.1 YbdD/YjiX family protein -
  C4K25_RS25890 (C4K25_5257) - 5745417..5747483 (-) 2067 WP_009045728.1 carbon starvation CstA family protein -
  C4K25_RS25895 (C4K25_5258) - 5747694..5748155 (+) 462 WP_007930037.1 isoprenylcysteine carboxylmethyltransferase family protein -
  C4K25_RS25900 (C4K25_5259) - 5748209..5748577 (+) 369 WP_007930036.1 PilZ domain-containing protein -
  C4K25_RS25905 (C4K25_5260) - 5748602..5749330 (-) 729 WP_114761494.1 hypothetical protein -
  C4K25_RS25910 (C4K25_5261) radA 5749355..5750722 (-) 1368 WP_007930034.1 DNA repair protein RadA Machinery gene
  C4K25_RS25915 (C4K25_5262) - 5750768..5751316 (-) 549 WP_114761495.1 ankyrin repeat domain-containing protein -
  C4K25_RS25920 (C4K25_5263) katB 5751504..5753045 (-) 1542 WP_114761496.1 catalase KatB -
  C4K25_RS25925 (C4K25_5264) mscL 5753332..5753745 (+) 414 WP_009045733.1 large-conductance mechanosensitive channel protein MscL -
  C4K25_RS25930 (C4K25_5265) - 5753799..5754575 (-) 777 WP_009045734.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48809.29 Da        Isoelectric Point: 7.1317

>NTDB_id=279158 C4K25_RS25910 WP_007930034.1 5749355..5750722(-) (radA) [Pseudomonas chlororaphis strain ATCC 17415]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPPGLRIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=279158 C4K25_RS25910 WP_007930034.1 5749355..5750722(-) (radA) [Pseudomonas chlororaphis strain ATCC 17415]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAATGGGCCGGCCAGTGCGGCGAATG
CGGGGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGCGGTGCCGCGGCCCCCAGCGGTCGTACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAGATCCCGCGTTTTTCCACGGCTTCCGGCGAGCTG
GACCGGGTGCTCGGCGGCGGCCTGGTCGACGGTTCGGTGGTGCTGATCGGCGGCGACCCGGGGATCGGCAAATCGACCAT
TTTGTTACAGACCTTGTGCAACATCGCCACGCGCATGCCGGCGCTCTACGTCACAGGCGAGGAATCGCAGCAACAGGTAG
CGATGCGCGCCCGGCGCCTGGGCCTGCCCCAGGACCAGCTGCGGGTGATGACCGAAACCTGTATCGAAACCATCATCGCC
ACGGCCCGGCAGGAGAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAACTGCAATCGGCCCC
CGGCGGTGTTTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGGGTCCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGTGAATCCGACGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGTTTCGGCGCGGTCAACGAACTGGGCGTGTTCGG
CATGACCGACCGCGGCCTGAAAGAAGTTTCCAATCCTTCGGCGATCTTTCTCACCCGTGCCCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCTACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTAGATGACAGCCACCTGGCC
AATCCGCGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTACTGCACCGCCACGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTCGTCGGCGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCCTTGCCCCACGACTTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAAGTGCGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAAGCGGCCAAGCACGGCTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCCCCTAAAGAGCCACCGCCGGGCCTGCGGATCATTGCGGTAACCCGTCTGGAGCAGGCGCTGGATGCGCTGT
TCGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus pneumoniae Rx1

45.87

100

0.464
  radA Streptococcus pneumoniae R6

45.87

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.87

100

0.464
  radA Streptococcus pneumoniae D39

45.87

100

0.464
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459

Multiple sequence alignment