Detailed information NTG0279147

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K25_RS08815
• Genome accession: NZ_CP027714
• Coordinates: 1934972..1937203 (+)
• Length: 743 a.a.
• NCBI ID: WP_114759697.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 17415
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1929972..1942203

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K25_RS08790 (C4K25_1772)	-	1931093..1931752 (+)	660	WP_092418112.1	transglutaminase family protein	-
C4K25_RS08795 (C4K25_1773)	-	1931795..1932418 (+)	624	WP_009042835.1	glutathione S-transferase	-
C4K25_RS08800 (C4K25_1774)	-	1932551..1933483 (+)	933	WP_007931649.1	ABC transporter ATP-binding protein	-
C4K25_RS08805 (C4K25_1775)	-	1933480..1934259 (+)	780	WP_007931651.1	ABC transporter permease	-
C4K25_RS08810 (C4K25_1776)	-	1934308..1934823 (-)	516	WP_007931653.1	DUF2062 domain-containing protein	-
C4K25_RS08815 (C4K25_1777)	comA	1934972..1937203 (+)	2232	WP_114759697.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K25_RS08820 (C4K25_1778)	exbB	1937306..1937941 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K25_RS08825 (C4K25_1779)	-	1937938..1938366 (+)	429	WP_007931660.1	biopolymer transporter ExbD	-
C4K25_RS08830 (C4K25_1780)	lpxK	1938366..1939376 (+)	1011	WP_092418114.1	tetraacyldisaccharide 4'-kinase	-
C4K25_RS08835 (C4K25_1781)	-	1939399..1939584 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K25_RS08840 (C4K25_1782)	kdsB	1939581..1940345 (+)	765	WP_009042838.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K25_RS08845 (C4K25_1783)	-	1940345..1940809 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
C4K25_RS08850 (C4K25_1784)	murB	1940806..1941825 (+)	1020	WP_114759696.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 80980.01 Da
• Isoelectric Point: 10.2100

>NTDB_id=279147 C4K25_RS08815 WP_114759697.1 1934972..1937203(+) (comA) [Pseudomonas chlororaphis strain ATCC 17415]
MRTGMLAFAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQSALDDRLAAPLDGQTRWLEG
RVVGLPQQAEGLVRFELEDGRARRGRIPQRLRLAWHGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATRESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSQEDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRRPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWIAPAIPLWAWSISALGALLLLLPAGVPLRPLGWPMLLLVV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAQGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSAALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279147 C4K25_RS08815 WP_114759697.1 1934972..1937203(+) (comA) [Pseudomonas chlororaphis strain ATCC 17415]
ATGCGCACAGGGATGCTGGCGTTTGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGTT
GGCAGTGCTGCCGGTAGTGGCCTTGATGCTGTTGCCGTTTCGCACCTATCCATTGGCCCTTTTTCTGTTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATCGGCGCTGGATGATCGTTTGGCGGCACCACTCGACGGGCAGACTCGCTGGCTCGAAGGT
CGAGTGGTGGGGCTGCCGCAGCAGGCCGAGGGGCTGGTGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGGCGAAT
CCCGCAACGCCTGCGCCTGGCCTGGCATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGTTGCTGGCCCAGCGCATCGGCGCCACGGGT
ACGGTCAAGGATGGGCAATTGCTGGCCGCCACCCGGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCACGGGCGCGCCGGCGGCCTGGCGGCCCTGGTGCTGGGCGACGGTTCGGGCTTGAGCCAGGAAGACTGGCGTGTCT
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCAGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGTTACGGCCTGTGGCCCGGACGCAGGCCCTGGCTGCCCTGGGCCTGCGGGCTGGCATTCGCCTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGCCGTGCCTGTGTGATGGTGGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCACCTGGGCGCCTGGTGGCCGTTCTTGCTGGCATTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGCTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGTCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACCTGCTGTT
CCGCGGCCTGACCCTGCTGGCTGCCCAGTGGCCGGCGTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGAGCCTTGCTGCTGTTGCTGCCCGCGGGCGTGCCGCTGCGTCCCTTGGGCTGGCCGATGCTGTTGTTGGTGGTG
TTCCCACCGAAAAACACGCTGCCATATGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGATTCCGACCTGGGCGCGCGGGTAGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCCTATTTACCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTGCGTTTTTCCCTGTGGCAATGGGCAGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCCAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCCGAA
CGCGCCTTGCTGGATACCCCGCTGGCCGTCGAGACCCACTGGTTGCAGGCGCCGCACCATGGCAGCCGCAGTTCGTCGTC
CGCGGCCCTGCTCAAGGCTCTTGCGCCTTCGGCGGTGCTGATCTCCCGTGGGCACGGCAATGGGTTTGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAGGGAGCGCTGCGGCTGATGCTG
GGTACTTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624