Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ECSMS35_RS02565 Genome accession   NC_010498
Coordinates   522718..523323 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli SMS-3-5     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 517718..528323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECSMS35_RS02535 (EcSMS35_0509) rsmS 518423..518584 (-) 162 WP_000051142.1 pleiotropic regulatory protein RsmS -
  ECSMS35_RS02540 (EcSMS35_0510) priC 518598..519125 (-) 528 WP_000844860.1 primosomal replication protein N'' -
  ECSMS35_RS02545 (EcSMS35_0511) ybaN 519195..519572 (+) 378 WP_001188905.1 DUF454 family protein -
  ECSMS35_RS02550 (EcSMS35_0512) apt 519725..520276 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ECSMS35_RS02555 (EcSMS35_0513) dnaX 520405..522336 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  ECSMS35_RS02560 (EcSMS35_0514) ybaB 522389..522718 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ECSMS35_RS02565 (EcSMS35_0515) recR 522718..523323 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ECSMS35_RS02570 (EcSMS35_0516) htpG 523433..525307 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  ECSMS35_RS02575 (EcSMS35_0518) adk 525488..526132 (+) 645 WP_001220233.1 adenylate kinase -
  ECSMS35_RS02580 (EcSMS35_0520) hemH 526264..527226 (+) 963 WP_001250112.1 ferrochelatase -
  ECSMS35_RS02585 (EcSMS35_0519) aes 527223..528182 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=27914 ECSMS35_RS02565 WP_001195025.1 522718..523323(+) (recR) [Escherichia coli SMS-3-5]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=27914 ECSMS35_RS02565 WP_001195025.1 522718..523323(+) (recR) [Escherichia coli SMS-3-5]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment