Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K26_RS26255 Genome accession   NZ_CP027713
Coordinates   5779276..5780643 (-) Length   455 a.a.
NCBI ID   WP_124352681.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain TAMOak81     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5774276..5785643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K26_RS26230 (C4K26_5289) - 5775124..5775321 (-) 198 WP_007930039.1 YbdD/YjiX family protein -
  C4K26_RS26235 (C4K26_5290) - 5775337..5777403 (-) 2067 WP_007930038.1 carbon starvation CstA family protein -
  C4K26_RS26240 (C4K26_5291) - 5777614..5778075 (+) 462 WP_124352679.1 isoprenylcysteine carboxylmethyltransferase family protein -
  C4K26_RS26245 (C4K26_5292) - 5778129..5778497 (+) 369 WP_007930036.1 PilZ domain-containing protein -
  C4K26_RS26250 (C4K26_5293) - 5778523..5779251 (-) 729 WP_124352680.1 hypothetical protein -
  C4K26_RS26255 (C4K26_5294) radA 5779276..5780643 (-) 1368 WP_124352681.1 DNA repair protein RadA Machinery gene
  C4K26_RS26260 (C4K26_5295) - 5780689..5781237 (-) 549 WP_124352682.1 ankyrin repeat domain-containing protein -
  C4K26_RS26265 (C4K26_5296) katB 5781426..5782967 (-) 1542 WP_124352683.1 catalase KatB -
  C4K26_RS26270 (C4K26_5297) mscL 5783254..5783667 (+) 414 WP_124352684.1 large-conductance mechanosensitive channel protein MscL -
  C4K26_RS26275 (C4K26_5298) - 5783725..5784501 (-) 777 WP_124352685.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48780.30 Da        Isoelectric Point: 7.1317

>NTDB_id=279132 C4K26_RS26255 WP_124352681.1 5779276..5780643(-) (radA) [Pseudomonas chlororaphis strain TAMOak81]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPPGLRIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=279132 C4K26_RS26255 WP_124352681.1 5779276..5780643(-) (radA) [Pseudomonas chlororaphis strain TAMOak81]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAATGGGCCGGCCAGTGCGGCGAATG
CGGGGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGCGGCGCCGCGGCCCCCAGCGGTCGTACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAGATCCCGCGCTTTTCCACGGCTTCCGGCGAACTG
GACCGAGTGCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGACCCGGGAATCGGCAAATCGACCAT
TCTGTTGCAAACCTTGTGCAACATCGCCACGCGCATGCCGGCGCTCTACGTCACCGGCGAGGAATCGCAGCAACAGGTGG
CGATGCGCGCCCGGCGCCTGGGCCTGCCCCAGGACCAGCTGCGGGTGATGACCGAAACCTGTATCGAAACCATCATCGCC
ACGGCCCGGGTGGAGAAACCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGCTGCAATCGGCCCC
CGGTGGTGTTTCCCAAGTGCGCGAAAGCGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCATGTGACCAAGGAGGGCGCGCTGGCCGGACCGCGGGTCCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGTGAATCCGACGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCAGTCAATGAGCTGGGCGTATTCGG
CATGACCGACCGCGGCCTGAAGGAAGTGTCCAACCCTTCGGCGATTTTCCTCACGCGTGCCCAGGAGGAGGTCCCGGGCA
GTGTGGTCATGGCTACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AACCCACGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTCCTGCACCGCCACGGCGGCAT
TCCGACCCACGATCAGGATGTGTTCCTCAACGTCGTCGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCTTTGCCCCACGACTTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAAGTGCGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAAGCGGCCAAGCACGGCTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCTCCAAAAGAGCCTCCGCCGGGCCTGCGGATCATTGCGGTAACCCGTCTGGAGCAGGCGCTGGATGCGCTGT
TCGAATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus pneumoniae Rx1

45.87

100

0.464
  radA Streptococcus pneumoniae R6

45.87

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.87

100

0.464
  radA Streptococcus pneumoniae D39

45.87

100

0.464
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459

Multiple sequence alignment