Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K27_RS26900 Genome accession   NZ_CP027712
Coordinates   5924474..5925841 (-) Length   455 a.a.
NCBI ID   WP_007930034.1    Uniprot ID   A0AAX2EB22
Organism   Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5919474..5930841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K27_RS26875 (C4K27_5441) - 5920318..5920515 (-) 198 WP_007930039.1 YbdD/YjiX family protein -
  C4K27_RS26880 (C4K27_5442) - 5920531..5922597 (-) 2067 WP_053262750.1 carbon starvation CstA family protein -
  C4K27_RS26885 (C4K27_5443) - 5922807..5923268 (+) 462 WP_007930037.1 isoprenylcysteine carboxylmethyltransferase family protein -
  C4K27_RS26890 (C4K27_5444) - 5923322..5923690 (+) 369 WP_007930036.1 PilZ domain-containing protein -
  C4K27_RS26895 (C4K27_5445) - 5923716..5924444 (-) 729 WP_053262751.1 hypothetical protein -
  C4K27_RS26900 (C4K27_5446) radA 5924474..5925841 (-) 1368 WP_007930034.1 DNA repair protein RadA Machinery gene
  C4K27_RS26905 (C4K27_5447) - 5925888..5926436 (-) 549 WP_053262752.1 ankyrin repeat domain-containing protein -
  C4K27_RS26910 (C4K27_5448) katB 5926626..5928167 (-) 1542 WP_009045732.1 catalase KatB -
  C4K27_RS26915 (C4K27_5449) mscL 5928454..5928867 (+) 414 WP_053262753.1 large-conductance mechanosensitive channel protein MscL -
  C4K27_RS26920 (C4K27_5450) - 5928924..5929700 (-) 777 WP_053262754.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48809.29 Da        Isoelectric Point: 7.1317

>NTDB_id=279106 C4K27_RS26900 WP_007930034.1 5924474..5925841(-) (radA) [Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPPGLRIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=279106 C4K27_RS26900 WP_007930034.1 5924474..5925841(-) (radA) [Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAATGGGCCGGCCAGTGCGGCGAATG
CGGGGCCTGGAACACCCTGACCGAGACCATGGTGGAAAGCGGCGGTGCCGCGGCCCCCAGCGGTCGTACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAAATCCCGCGTTTTTCCACGGCTTCCGGCGAACTG
GACCGGGTGCTCGGCGGCGGCCTGGTCGACGGTTCGGTGGTGCTGATCGGCGGCGACCCGGGGATCGGCAAGTCGACCAT
TTTGTTACAGACCTTGTGCAACATCGCCACGCGCATGCCGGCGCTCTACGTCACCGGCGAGGAATCGCAGCAACAGGTGG
CGATGCGCGCCCGGCGCCTGGGCCTGCCTCAGGACCAGCTGCGGGTGATGACCGAAACCTGTATCGAAACCATCATCGCC
ACGGCCCGGCAGGAGAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGCTGCAATCGGCCCC
CGGCGGTGTTTCCCAGGTGCGCGAAAGCGCCGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTTCTGG
TGGGCCATGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGGGTCCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGTGAATCCGACGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGTTTCGGCGCGGTCAACGAACTGGGCGTGTTCGG
CATGACCGACCGCGGCCTGAAAGAAGTTTCCAATCCTTCGGCGATCTTTCTCACCCGAGCCCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCTACCTGGGAAGGTACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AACCCGCGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTACTGCACCGCCACGGCGGCAT
TCCGACCCACGATCAGGATGTGTTCCTCAATGTCGTCGGCGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCGAGCCTGCGCAATCGGCCCTTGCCCCACGACTTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAAGTGCGCCCGGTACCGAGCGGCCAGGAGCGCCTCAAGGAAGCGGCCAAGCACGGCTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCCCCAAAAGAGCCTCCACCGGGCCTGCGAATCATTGCGGTAACCCGTCTGGAGCAGGCGCTGGATGCGCTGT
TCGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus pneumoniae Rx1

45.87

100

0.464
  radA Streptococcus pneumoniae R6

45.87

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.87

100

0.464
  radA Streptococcus pneumoniae D39

45.87

100

0.464
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459

Multiple sequence alignment