Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   D9C10_RS20325 Genome accession   NZ_CP032853
Coordinates   3741973..3742203 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. subtilis strain MH-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3736973..3747203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C10_RS20295 (D9C10_20295) ridA 3737137..3737514 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  D9C10_RS20300 (D9C10_20300) spoVG 3737709..3738002 (+) 294 WP_003218346.1 septation regulator SpoVG -
  D9C10_RS20305 (D9C10_20305) glmU 3738195..3739565 (+) 1371 WP_017696375.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  D9C10_RS20310 (D9C10_20310) prsS 3739588..3740541 (+) 954 WP_069837180.1 ribose-phosphate diphosphokinase -
  D9C10_RS20315 (D9C10_20315) rplYB 3740626..3741240 (+) 615 WP_069963938.1 50S ribosomal protein L25/general stress protein Ctc -
  D9C10_RS20320 (D9C10_20320) pth 3741347..3741913 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  D9C10_RS20325 (D9C10_20325) subA/fin 3741973..3742203 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  D9C10_RS20330 (D9C10_20330) mfd 3742273..3745806 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  D9C10_RS20335 (D9C10_20335) spoVT 3745942..3746478 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=279098 D9C10_RS20325 WP_003243417.1 3741973..3742203(+) (subA/fin) [Bacillus subtilis subsp. subtilis strain MH-1]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=279098 D9C10_RS20325 WP_003243417.1 3741973..3742203(+) (subA/fin) [Bacillus subtilis subsp. subtilis strain MH-1]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1