Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECSMS35_RS01535 Genome accession   NC_010498
Coordinates   317136..317615 (+) Length   159 a.a.
NCBI ID   WP_000438147.1    Uniprot ID   -
Organism   Escherichia coli SMS-3-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 312136..322615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECSMS35_RS29650 - 314709..314860 (+) 152 Protein_294 IS3 family transposase -
  ECSMS35_RS01520 (EcSMS35_0305) - 314956..316133 (+) 1178 WP_152895938.1 IS3 family transposase -
  ECSMS35_RS01525 (EcSMS35_0306) - 316344..316580 (+) 237 Protein_296 DUF905 domain-containing protein -
  ECSMS35_RS01530 (EcSMS35_0307) - 316666..317124 (+) 459 WP_000211834.1 antirestriction protein -
  ECSMS35_RS01535 (EcSMS35_0308) radC 317136..317615 (+) 480 WP_000438147.1 RadC family protein Machinery gene
  ECSMS35_RS01540 (EcSMS35_0309) - 317624..317845 (+) 222 WP_001220307.1 DUF987 domain-containing protein -
  ECSMS35_RS01545 (EcSMS35_0310) yfjZ 317865..318182 (+) 318 WP_000065824.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECSMS35_RS01550 - 318203..318571 (+) 369 WP_000854677.1 TA system toxin CbtA family protein -
  ECSMS35_RS01570 (EcSMS35_0313) yagU 319364..319978 (+) 615 WP_001019920.1 YagU family protein -
  ECSMS35_RS01575 ykgJ 320227..320556 (-) 330 WP_001303809.1 YkgJ family cysteine cluster protein -
  ECSMS35_RS01580 (EcSMS35_0315) ecpE 320869..321579 (-) 711 WP_001361803.1 fimbrial chaperone EcpE -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17608.36 Da        Isoelectric Point: 8.6570

>NTDB_id=27909 ECSMS35_RS01535 WP_000438147.1 317136..317615(+) (radC) [Escherichia coli SMS-3-5]
MEQSLIPLAPALPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMVLYLNQQNQLIAHETLFAG
SISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTSPSKADKTITQRLVQALQLVDIRVPDHLIVGGTQILSFAEHGLL

Nucleotide


Download         Length: 480 bp        

>NTDB_id=27909 ECSMS35_RS01535 WP_000438147.1 317136..317615(+) (radC) [Escherichia coli SMS-3-5]
ATGGAACAGTCACTTATCCCACTGGCTCCGGCATTACCACTAACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCT
TGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCCCGCGACTGGCTGAAACTGAAAATGGCGG
GACTGGAGCGCGAAGAGTTTATGGTGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGT
TCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTACTTCAATGCGGCAGCAGTGATACTGGC
GCATAACCATCCCTCCGGAGACACCTCGCCCAGCAAGGCAGATAAGACCATCACGCAGCGTCTGGTGCAGGCGCTTCAGC
TCGTTGATATCCGTGTGCCTGACCACCTTATCGTCGGTGGTACGCAGATATTGTCGTTCGCTGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.409

0.377

Multiple sequence alignment