Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C4K28_RS29065 Genome accession   NZ_CP027711
Coordinates   6437994..6438401 (-) Length   135 a.a.
NCBI ID   WP_016704855.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. piscium strain ChPhzTR44     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6432994..6443401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K28_RS29050 (C4K28_5856) - 6434873..6436909 (-) 2037 WP_227746013.1 methyl-accepting chemotaxis protein -
  C4K28_RS29055 (C4K28_5857) - 6437034..6437573 (-) 540 WP_025807193.1 chemotaxis protein CheW -
  C4K28_RS29060 (C4K28_5858) pilH 6437585..6437950 (-) 366 WP_007953328.1 twitching motility response regulator PilH -
  C4K28_RS29065 (C4K28_5859) pilG 6437994..6438401 (-) 408 WP_016704855.1 twitching motility response regulator PilG Regulator
  C4K28_RS29070 (C4K28_5860) gshB 6438638..6439594 (+) 957 WP_063433300.1 glutathione synthase -
  C4K28_RS29075 (C4K28_5861) - 6439715..6440614 (+) 900 WP_025807189.1 energy transducer TonB -
  C4K28_RS29080 (C4K28_5862) - 6440691..6441260 (+) 570 WP_063433301.1 YqgE/AlgH family protein -
  C4K28_RS29085 (C4K28_5863) ruvX 6441260..6441697 (+) 438 WP_009046019.1 Holliday junction resolvase RuvX -
  C4K28_RS29090 (C4K28_5864) pyrR 6441819..6442325 (+) 507 WP_007929976.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  C4K28_RS29095 (C4K28_5865) - 6442352..6443356 (+) 1005 WP_007929978.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14762.13 Da        Isoelectric Point: 6.8624

>NTDB_id=279084 C4K28_RS29065 WP_016704855.1 6437994..6438401(-) (pilG) [Pseudomonas chlororaphis subsp. piscium strain ChPhzTR44]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAVDGFEALAKIADHHPDIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=279084 C4K28_RS29065 WP_016704855.1 6437994..6438401(-) (pilG) [Pseudomonas chlororaphis subsp. piscium strain ChPhzTR44]
ATGGAACAGCAATCCAGCGCCCTCAAGGTGATGGTGATCGATGATTCGAAGACGATTCGCCGCACGGCCGAAACGTTGCT
GAAGAATGTGGGTTGTGAAGTCATTACCGCGGTCGACGGTTTCGAGGCGCTGGCCAAGATCGCCGACCACCACCCGGACA
TCATCTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCGCTGATCAAGAACAACAGCGCGTTCAAG
TCCACGCCGGTGATTATGCTGTCCTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGCTCTGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTGAGCGCGATCAAGGCCCATGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

77.6

92.593

0.719
  vicR Streptococcus mutans UA159

42.063

93.333

0.393

Multiple sequence alignment